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Protein Overview: gi|19075333

General Information:
Name(s) found: gi|19075333 [NCBI NR]
Description(s) found:
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  • gi|19075333|ref|NP_587833.1| hypothetical protein SPCC4G3.05c [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • hypothetical protein SPCC4G3.05c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 572 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSCPITFHR PSQALALKGI GPTICAKLEK KWNAYCLENN IPISTHNEQN DSHVNANKSS  60
   61 SETSSEKPRS VKKPTTRKRK VYVPSYRSGA YSILCALYML NKHEFATKPQ IVTMAQPYCD 120
  121 SSFGSATDRN MRYTAWSAMK TLITKNLVYQ TGHPSKYCLT DDGEEVCIRL AKVDDSFQRK 180
  181 HTVSNFSVSK SDDHDSSLCQ PPNFVTSINK AGSSSDHGGE LHVTYCPVDH NEVSDGVETD 240
  241 IDVDQVDSLT GIHDHHIINN EQLIDLTEQE KKQPNESNLS NLKIETVLFS NCTVFLLIDT 300
  301 REIRSPLDRN LIIDKLTNDF GVNCQVRSLE LGDALWVARD MESGQEVVLD FVVERKRYDD 360
  361 LVASIKDGRF HEQKARLKKS GIRSVTYILE ESSYDESFTE SIRTAVSNTQ VDQLFHVRHT 420
  421 RSLEHSVSLL AEMTKQINLF YEKRKTLAVI PDLSIEAKTY ESLREQLLKI DPSTPYHISY 480
  481 HAFSSVLSKS STLTVGDIFI RMLMTIKGIS ASKAIEIQKK YPTFMHLFEA YEKSSSSQER 540
  541 NLLLNKTCQG YGFQTIGPAL SAKVASVFFP ES

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..225] PSI-BLAST 34.0 Crystal structure of Pyrococcus furiosus Hef helicase domain
    2 View Details [226..282] deduced N/A No confident structure predictions are available.
    3 View Details [283..572] PSI-BLAST 38.0 XPF from Aeropyrum pernix, complex with DNA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • four-way junction helicase activity
    		•  10.562254984301 bayes_pls_golite062009
  • DNA helicase activity
    		•  7.81641089090703 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  3.88121538069074 bayes_pls_golite062009
  • single-stranded DNA specific endodeoxyribonuclease activity
    		•  3.87045877570028 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  3.62965779224499 bayes_pls_golite062009
  • excinuclease ABC activity
    		•  3.48615352002265 bayes_pls_golite062009
  • DNA binding
    		•  2.97855002479178 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  2.83758378400856 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.79236389919005 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  2.79104877030658 bayes_pls_golite062009
  • damaged DNA binding
    		•  2.3008149920351 bayes_pls_golite062009
  • helicase activity
    		•  2.29491252701513 bayes_pls_golite062009
  • binding
    		•  2.17324322139334 bayes_pls_golite062009
  • nuclease activity
    		•  1.92659045080864 bayes_pls_golite062009
  • endonuclease activity
    		•  1.7109181764667 bayes_pls_golite062009
  • DNA strand annealing activity
    		•  1.5117854648336 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.02983374615445 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.02325715570644 bayes_pls_golite062009
  • catalytic activity
    		•  0.816447099398022 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.73359455482295 bayes_pls_golite062009
  • protein binding
    		•  0.71091195096997 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle