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Protein Overview: gi|77415425

General Information:
Name(s) found: gi|77415425 [NCBI NR]
Description(s) found:
Found 6 descriptions.
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  • gi|77415425|gb|AAH98642.2| Chia protein [Rattus norvegicus] [NCBI NR]
    • Organism: Rattus norvegicus
    Length: 144 amino acids

    Gene Ontology:
    Cellular Component: extracellular space [UNKNOWN][ISS]
    cytoplasm [ISS]
    extracellular region [IEA]
    Biological Process: production of molecular mediator involved in inflammatory response [UNKNOWN][ISS]
    carbohydrate metabolic process [IEA]
    polysaccharide catabolic process [IEA]
    chitin catabolic process [UNKNOWN][ISS]
    apoptosis [IEA]
    metabolic process [IEA]
    positive regulation of chemokine secretion [UNKNOWN][ISS]
    Molecular Function: chitinase activity [UNKNOWN][ISS]
    chitin binding [IEA]
    cation binding [IEA]
    kinase binding [UNKNOWN]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLQSLLLLG TVACSISAPA RSPSPSTQPW EHVNAIQEAR RLLNLSRDTA AEMNETVEVI  60
   61 SEMFDLQEPT CLQTRLELYK QGLRGSLTKL KGPLTMMASH YKQHCPPTPE TSCATQIITF 120
  121 ESFKENLKDF LLVIPFDCWE PVQE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..144] PSI-BLAST 66.0 Granulocyte-macrophage colony-stimulating factor (GM-CSF)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cytokine receptor binding
    		•  6.47223189691244 bayes_pls_golite062009
  • receptor binding
    		•  5.3304255990112 bayes_pls_golite062009
  • cytokine activity
    		•  5.22856893358132 bayes_pls_golite062009
  • growth factor activity
    		•  4.92105782010612 bayes_pls_golite062009
  • protein binding
    		•  3.26483713001551 bayes_pls_golite062009
  • growth hormone activity
    		•  2.71439518801599 bayes_pls_golite062009
  • binding
    		•  2.48265117231403 bayes_pls_golite062009
  • prolactin receptor binding
    		•  2.45721634350294 bayes_pls_golite062009
  • interleukin-6 receptor binding
    		•  2.37535614986843 bayes_pls_golite062009
  • hormone activity
    		•  2.25587306265428 bayes_pls_golite062009
  • interleukin-27 binding
    		•  1.83998174953013 bayes_pls_golite062009
  • ciliary neurotrophic factor receptor binding
    		•  1.79326213321183 bayes_pls_golite062009
  • macrophage colony stimulating factor receptor binding
    		•  1.17163557856578 bayes_pls_golite062009
  • erythropoietin receptor binding
    		•  0.77580300541347 bayes_pls_golite062009
  • interleukin-12 binding
    		•  0.41824625672928 bayes_pls_golite062009
  • interleukin-3 receptor binding
    		•  0.264629367313661 bayes_pls_golite062009
  • catalytic activity
    		•  0.246169290135575 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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