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Protein Overview: pck-PD

General Information:
Name(s) found: pck-PD / FBpp0099568 [FlyBase]
Description(s) found:
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  • gi|85724776|ref|NP_001033820.1| pickel, isoform D [Drosophila melanogaster] [NCBI NR]
  • gi|84798385|gb|ABC67163.1| pickel, isoform D [Drosophila melanogaster] [NCBI NR]
  • The gene pickel is referred to in FlyBase by the symbol Dmel\pck (CG14779, FBgn0013720). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:1364699..1366350. It has the cytological map location 2A4. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: regulation of tube size, open tracheal system; establishment of glial blood-brain barrier; open tracheal system development; septate junction assembly. 7 alleles are reported. The phenotypes of these alleles are annotated with 15 unique terms, many of which group under: organ system; abdominal ventral denticle belt; embryonic/larval tracheal system; portion of tissue; larval abdominal segment; tracheal system; cuticle; embryonic dorsal trunk; abdominal 5 ventral denticle belt; abdominal segment 7; abdominal 3 ventral denticle belt. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • (AE003421) EG:80H7.2 gene product [alt 1] [Drosophila melanogaster] [yeastflysequest.fasta]
  • type=protein; loc=X:join(1365018..1365096,1365173..1365504); ID=FBpp0099568; name=pck-PD; parent=FBgn0013720,FBtr0100198; dbxref=FlyBase_Annotation_IDs:CG14779-PD,FlyBase:FBpp0099568,GB_protein:ABC67163.1,REFSEQ:NP_001033820,GB_protein:ABC67163; MD5=6b164 [fly-100309-contam.fasta]
  • CG14779-PD, isoform D [Drosophila melanogaster] [nr-271106-contam.fasta]
  • pickel CG14779-PD, isoform D [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=X:join(1365018..1365096,1365173..1365504); ID=FBpp0099568; name=pck-PD; parent=FBgn0013720,FBtr0100198; dbxref=FlyBase_Annotation_IDs:CG14779-PD,FlyBase:FBpp0099568,GB_protein:ABC67163.1,REFSEQ:NP_001033820,GB_protein:ABC67163; MD5=6b164ceb3db5d077f701c06d23da7204; length=136; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=X:join(1365018..1365096,1365173..1365504); ID=FBpp0099568; name=pck-PD; parent=FBgn0013720,FBtr0100198; dbxref=FlyBase_Annotation_IDs:CG14779-PD,FlyBase:FBpp0099568,GB_protein:ABC67163.1,REFSEQ:NP_001033820,GB_protein:ABC67163; MD5=6b164ceb3db5d077f701c06d23da7204; length=136; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Pickel, isoform D OS=Drosophila melanogaster GN=pck PE=4 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=X:join(1365018..1365096,1365173..1365504); ID=FBpp0099568; name=pck-PD; parent=FBgn0013720,FBtr0100198; dbxref=FlyBase_Annotation_IDs:CG14779-PD,FlyBase:FBpp0099568,GB_protein:ABC67163.1,REFSEQ:NP_001033820,GB_protein:ABC67163,FlyMine:FBpp0099568,modMine:FBpp0099568; MD5=6b164ceb3db5d077f701c06d23da7204; length=136; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=X:join(1470985..1471063,1471140..1471471); ID=FBpp0099568; name=pck-PD; parent=FBgn0013720,FBtr0100198; dbxref=FlyBase_Annotation_IDs:CG14779-PD,FlyBase:FBpp0099568,GB_protein:ABC67163.1,REFSEQ:NP_001033820,GB_protein:ABC67163,FlyMine:FBpp0099568,modMine:FBpp0099568; MD5=6b164ceb3db5d077f701c06d23da7204; length=136; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=X:join(1470985..1471063,1471140..1471471); ID=FBpp0099568; name=pck-PD; parent=FBgn0013720,FBtr0100198; dbxref=FlyBase_Annotation_IDs:CG14779-PD,FlyBase:FBpp0099568,GB_protein:ABC67163.1,REFSEQ:NP_001033820,GB_protein:ABC67163,FlyMine:FBpp0099568,modMine:FBpp0099568; MD5=6b164ceb3db5d077f701c06d23da7204; length=136; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of O76899, Pickel, isoform D OS=Drosophila melanogaster GN=pck PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0099568 type=protein; loc=X:join(1470985..1471063,1471140..1471471); ID=FBpp0099568; name=pck-PD; parent=FBgn0013720,FBtr0100198; dbxref=FlyBase_Annotation_IDs:CG14779-PD,FlyBase:FBpp0099568,GB_protein:ABC67163.1,REFSEQ:NP_001033820,GB_protein:ABC67163,FlyMine:FBpp0099568,modMine:FBpp0099568; MD5=6b164ceb3db5d077f701c06d23da7204; length=136; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=X:join(1470985..1471063,1471140..1471471); ID=FBpp0099568; name=pck-PD; parent=FBgn0013720,FBtr0100198; dbxref=FlyBase_Annotation_IDs:CG14779-PD,FlyBase:FBpp0099568,GB_protein:ABC67163.1,REFSEQ:NP_001033820,GB_protein:ABC67163,UniProt/TrEMBL:Q2PE37,FlyMine:FBpp0099568,modMine:FBpp0099568; MD5=6b164ceb3db5d077f701c06d23da7204; length=136; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 136 amino acids

    Gene Ontology:
    Cellular Component: septate junction [ISS]
    Biological Process: regulation of tube size, open tracheal system [IMP]
    septate junction assembly [IMP]
    establishment of glial blood-brain barrier [IMP]
    open tracheal system development [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRELNKQQSQ DTTDSGVEKG DYPRATNGVV FGAIVTFASF FVLMMSFCSP YWIESYEETR  60
   61 ASFKNMGLWQ YCFKDFVYPK YAFLKQFTGC HNIFSHVSTA NWPVLILVLI FSHSYRSITL 120
  121 SVSICCPAGS WRCRAS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..136] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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