YRC Public Data Repository - Protein Structure Prediction

Protein:	pck-PD
Organism:	Drosophila melanogaster
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pck-PD.

Description	E-value	Query Range	Subject Range
pck-PC, pck-PA - The gene pickel is referred to in FlyBase by the symbol Dmel\pck (CG14779, FBgn0013720). It is a pro...	201.0	[0..1]	[96..1]
gi\|54643749, gi\|... - gi\|54643749\|gb\|EAL32492.1\| GA13238-PA [Drosophila pseudoobscura], gi\|125983338\|ref\|XP_001355434.1\| G...	199.0	[0..1]	[97..1]
gi\|55243942, gi\|... - gi\|58380183\|ref\|XP_310368.2\| ENSANGP00000018926 [Anopheles gambiae str. PEST], gi\|55243942\|gb\|EAA061... AGAP003808-PA - pickel\|protein_coding\|2R:43705627:43706766:-1\|gene:AGAP003808	162.0	[0..15]	[95..3]
gi\|157109110, gi... - gi\|157109110\|ref\|XP_001650527.1\| hypothetical protein AaeL_AAEL005228 [Aedes aegypti], gi\|108879101\|...	152.0	[0..15]	[95..3]
gi\|66534431 - gi\|66534431\|ref\|XP_623886.1\| PREDICTED: similar to pickel CG14779-PA, isoform A [Apis mellifera]	128.0	[0..16]	[95..2]
gi\|91083261 - gi\|91083261\|ref\|XP_966859.1\| PREDICTED: similar to pickel CG14779-PA [Tribolium castaneum]	127.0	[0..18]	[96..6]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRELNKQQSQ DTTDSGVEKG DYPRATNGVV FGAIVTFASF FVLMMSFCSP YWIESYEETR  60
   61 ASFKNMGLWQ YCFKDFVYPK YAFLKQFTGC HNIFSHVSTA NWPVLILVLI FSHSYRSITL 120
  121 SVSICCPAGS WRCRAS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits