YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: taf-4

General Information:
Name(s) found: taf-4 / CE39613 [WormBase]
Description(s) found:
SHOW ONLY BEST
  • WBGene00006385 locus:taf-4 status:Confirmed UniProt:O61707 protein_id:CCD73344.1 [WormBase]
  • gi|85662539|gb|AAC16427.2| Taf (tbp-associated transcription factor) family protein 4 [Caenorhabditis elegans] [NCBI NR]
  • gi|115533579|ref|NP_490728.2| TAF (TBP-associated transcription factor) family member (taf-4) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep130-phg-ecoli-orf-rand.fasta]
  • CE39613 WBGene00006385 locus:taf-4 status:Partially_confirmed UniProt:O61707_CAEEL protein_id:AAC16427.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE39613 WBGene00006385 locus:taf-4 status:Partially_confirmed UniProt:O61707_CAEEL protein_id:AAC16427.2| [wormORF-contam.fasta]
  • CE39613 WBGene00006385 locus:taf-4 status:Partially_confirmed TR:O61707 protein_id:AAC16427.2 [wormpep160-contam.fasta]
  • TAF (TBP-associated transcription factor) family member (taf-4) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Taf (tbp-associated transcription factor) family protein 4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE39613 WBGene00006385 locus:taf-4 status:Partially_confirmed UniProt:O61707 protein_id:AAC16427.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE39613 WBGene00006385 locus:taf-4 status:Confirmed UniProt:O61707 protein_id:CCD73344.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • TAF (TBP-associated transcription factor) family OS=Caenorhabditis elegans GN=taf-4 PE=1 SV=2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 523 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][IEALink to PubMed article]
    transcription factor TFIID complex [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    regulation of transcription, DNA-dependent [IEALink to PubMed article]
    transcription initiation [IEALink to PubMed article]
    reproduction [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: transcription initiation factor activity [IEALink to PubMed article]
    transcription factor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPRFRLVQ GKAIGERSTP GVSTPEPAPP QIKQEVDYQD AHQMAPEPVE APQAQNHQMQ  60
   61 PPRQPIQQQM QHFQSPSPMA PQGPPGTPQN SAAAAAAASD DKNVTKCVRF LKTLINLSNN 120
  121 DDPEMPDKAA RVKELIRGVI YLETTAEEFT RNLQQVLKSQ AQPHLLPFLQ NTLPALRNAV 180
  181 RNGTASVEGV NPPPGYVFNN GRTPGPPQPP PPQQQSQQQP PLEMRQIPNP NQIPPQMVQG 240
  241 GPHMVSVGAR PMIRPMGPGG PSPMGLQGPV RGPMGHQMVQ MHPPPPPQQI QQQHPAPPVE 300
  301 MEVEENLQPT AAATATRQYP EGSLKSSILK PDEVLNRITK RMMSSCSVEE EALVAISDAV 360
  361 ESHLRELITL MAGVAEHRVE SLRIPENYVA IDDVKRQLRF LEDLDRQEEE LRESREKESL 420
  421 IRMSKNKNSG KETIEKAKEM QRQDAEAKRN RDANAAAIAA LSSNKTVKNK WENTGAATTA 480
  481 PRPRTVRVTT RDLHLLVNQD SRFTGTFIRE KMSYGGPAVD TTI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..97] deduced N/A No confident structure predictions are available.
    2 View Details [98..228] FFAS03 4.28 No description for 2p6vA was found.
    3 View Details [229..338] deduced N/A No confident structure predictions are available.
    4 View Details [339..386] FFAS03 2.25 TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain
    5 View Details [387..523] PSI-BLAST 5.0 No description for 2i1jA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  1.61022191882652 bayes_pls_golite062009
  • DNA binding
    		•  0.796700929077419 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.653799394985054 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.409034934848948 bayes_pls_golite062009
  • protein binding
    		•  0.20067182931644 bayes_pls_golite062009
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle