| Protein: | taf-4 |
| Organism: | Caenorhabditis elegans |
| Length: | 523 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for taf-4.
| Description | E-value | Query Range |
Subject Range |
|
|
253.0 | [0..20] | [517..50] |
|
Region A: Residues: [1-97] |
1 11 21 31 41 51
| | | | | |
1 MSLPRFRLVQ GKAIGERSTP GVSTPEPAPP QIKQEVDYQD AHQMAPEPVE APQAQNHQMQ 60
61 PPRQPIQQQM QHFQSPSPMA PQGPPGTPQN SAAAAAA
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [98-228] |
1 11 21 31 41 51
| | | | | |
1 ASDDKNVTKC VRFLKTLINL SNNDDPEMPD KAARVKELIR GVIYLETTAE EFTRNLQQVL 60
61 KSQAQPHLLP FLQNTLPALR NAVRNGTASV EGVNPPPGYV FNNGRTPGPP QPPPPQQQSQ 120
121 QQPPLEMRQI P
|
| Detection Method: | |
| Confidence: | 4.28 |
| Match: | 2p6vA |
| Description: | No description for 2p6vA was found. |
|
Region A: Residues: [229-338] |
1 11 21 31 41 51
| | | | | |
1 NPNQIPPQMV QGGPHMVSVG ARPMIRPMGP GGPSPMGLQG PVRGPMGHQM VQMHPPPPPQ 60
61 QIQQQHPAPP VEMEVEENLQ PTAAATATRQ YPEGSLKSSI LKPDEVLNRI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [339-386] |
1 11 21 31 41 51
| | | | | |
1 TKRMMSSCSV EEEALVAISD AVESHLRELI TLMAGVAEHR VESLRIPE
|
| Detection Method: | |
| Confidence: | 2.25 |
| Match: | 1h3oA |
| Description: | TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.61022191882652 | bayes_pls_golite062009 |
| DNA binding | 0.796700929077419 | bayes_pls_golite062009 |
| nucleic acid binding | 0.653799394985054 | bayes_pls_golite062009 |
| transcription regulator activity | 0.409034934848948 | bayes_pls_golite062009 |
| protein binding | 0.20067182931644 | bayes_pls_golite062009 |
|
Region A: Residues: [387-523] |
1 11 21 31 41 51
| | | | | |
1 NYVAIDDVKR QLRFLEDLDR QEEELRESRE KESLIRMSKN KNSGKETIEK AKEMQRQDAE 60
61 AKRNRDANAA AIAALSSNKT VKNKWENTGA ATTAPRPRTV RVTTRDLHLL VNQDSRFTGT 120
121 FIREKMSYGG PAVDTTI
|
| Detection Method: | |
| Confidence: | 5.0 |
| Match: | 2i1jA |
| Description: | No description for 2i1jA was found. |
