YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|55249837

General Information:
Name(s) found: gi|55249837 [NCBI NR]
Description(s) found:
Found 2 descriptions.
SHOW ALL
  • gb|AAH85983.1| Unknown (protein for MGC:97982) [Xenopus laevis] [NCBI NR]
    • Organism: Xenopus laevis
    Length: 292 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPLWSMSAG SVRKRAEGEE KTLAGDVKTS PPRSAPKKQL PSIPKNALPI AKPTSPAPAA  60
   61 QSTNGTHASY GPFYLEYSLL AEFTLVVKQK LPGVYVQPSY RSALVWFGVI FIRHGLYQDG 120
  121 VFKFTVYIPD NYPDGDCPRL LFDIPVFHPL VDPTSGELDV KRAFAKWRRN HNHIWQVLMY 180
  181 ARRVFYKIDT TSPLNPEAAV LYEKDIQLFK SKVVDSVKVC TARLFDQPKI EDPYAISFSP 240
  241 WNPSVHDEAR EKMLTQKKPD EQHNKSVHVA GLSWVKPGSV QPFSKEEKTV AT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..292] PSI-BLAST 36.221849 Ubiquitin conjugating enzyme, UBC

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • small conjugating protein ligase activity
    		•  3.05738310699461 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  2.76087475780036 bayes_pls_golite062009
  • protein binding
    		•  1.77678273247394 bayes_pls_golite062009
  • protein kinase activity
    		•  1.71434138094347 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  1.47589315166883 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  1.43119775854149 bayes_pls_golite062009
  • kinase activity
    		•  1.33272335404887 bayes_pls_golite062009
  • binding
    		•  1.11361711056154 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.903446438346022 bayes_pls_golite062009
  • catalytic activity
    		•  0.891402822028799 bayes_pls_golite062009
  • protein serine/threonine kinase activity
    		•  0.847906750898607 bayes_pls_golite062009
  • ligase activity
    		•  0.42456400889624 bayes_pls_golite062009
  • transferase activity
    		•  0.416498237981883 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.359884647278502 bayes_pls_golite062009
  • DNA binding
    		•  0.125877612807025 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  0.0114094023032139 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle