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Protein Overview: RPE_ECOL6

General Information:
Name(s) found: RPE_ECOL6 [Swiss-Prot]
Description(s) found:
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  • gi|26249980|ref|NP_756020.1| ribulose-phosphate 3-epimerase [Escherichia coli CFT073] [NCBI NR]
  • gi|26110409|gb|AAN82594.1|AE016768_12 Ribulose-phosphate 3-epimerase [Escherichia coli CFT073] [NCBI NR]
  • Ribulose-phosphate 3-epimerase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rpe PE=3 SV=1 [Swiss-Prot]
  • D-ribulose-5-phosphate 3-epimerase [Escherichia coli K12]gi|15833482|ref|NP_312255.1| D-ribulose-5-phosphate 3-epimerase [Escherichia coli O157:H7]gi|30065330|ref|NP_839501.1| D-ribulose-5-phosphate 3-epimerase [Shigella flexneri 2a str. 2457T]gi|26249 [nrdb_11152004_Chlamydomonas]
  • ribulose-phosphate 3-epimerase [Escherichia coli CFT073] [nr-271106-contam.fasta]
  • Ribulose-phosphate 3-epimerase [Escherichia coli CFT073] [nr-271106-contam.fasta]
    • Organism: Escherichia coli CFT073
    Length: 225 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQYLIAPSI LSADFARLGE DTAKALAAGA DVVHFDVMDN HYVPNLTIGP MVLKSLRNYG  60
   61 ITAPIDVHLM VKPVDRIVPD FAAAGASIIT FHPEASEHVD RTLQLIKENG CKAGLVFNPA 120
  121 TPLSYLDYVM DKLDVILLMS VNPGFGGQSF IPQTLDKLRE VRRRIDESGF DIRLEVDGGV 180
  181 KVNNIGEIAA AGADMFVAGS AIFDQPDYKK VIDEMRSELA KVSHE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..225] PSI-BLAST 53.39794 Crystal structure of D-ribulose 5-phosphate 3-epimerase from Synechocystis to 1.6 angstrom resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribulose-phosphate 3-epimerase activity
    		•  3.28372503209224 bayes_pls_golite062009
  • catalytic activity
    		•  2.44231061702877 bayes_pls_golite062009
  • intramolecular oxidoreductase activity
    		•  1.86158562896415 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, interconverting aldoses and ketoses
    		•  1.36492964250879 bayes_pls_golite062009
  • isomerase activity
    		•  0.935800409577999 bayes_pls_golite062009
  • racemase and epimerase activity, acting on carbohydrates and derivatives
    		•  0.764608070506109 bayes_pls_golite062009
  • orotidine-5'-phosphate decarboxylase activity
    		•  0.758594564254247 bayes_pls_golite062009
  • binding
    		•  0.595171555788202 bayes_pls_golite062009
  • racemase and epimerase activity
    		•  0.288948763149344 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  0.1100847613283 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.70

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle