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Protein Overview: gi|16759429

General Information:
Name(s) found: gi|16759429 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|16759429|ref|NP_455046.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. CT18] [NCBI NR]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi str. CT18
    Length: 423 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDKRKDGSG KLLYCSFCGK SQHEVRKLIA GPSVYICDEC VDLCNDIIRE EIKEVAPHRE  60
   61 RSALPTPHEI RTHLDDYVIG QEQAKKVLAV AVYNHYKRLR NGDTSNGVEL GKSNILLTGP 120
  121 TGSGKTLLAE TLARLLDVPF TMADATTLTE AGYVGEDVEN IIQKLLQKCD YDVQKAQRGI 180
  181 VYIDEIDKIS RKSDNPSITR DVSGEGVQQA LLKLIEGTVA AVPPQGGRKH PQQEFLQVDT 240
  241 SKILFICGGA FAGLDKVIAN RVETGSGIGF GATVKAKSDK ASEGELLSQV EPEDLIKFGL 300
  301 IPEFIGRLPV VATLNELSEE ALVQILKEPK NALTKQYQAL FNLEGVDLEF RDEALNAIAR 360
  361 KAMARKTGAR GLRSIVEAAL LDTMYDLPSM EDVEKVVIDE SVIAGQSKPL LIYGKPEAQA 420
  421 SGE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..64] FFAS03 3.42 NMR structure of the E. coli ClpX chaperone zinc binding domain dimer
    2 View Details [65..423] PSI-BLAST 53.154902 Crystal structure of helicobacter pylori ClpX

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.63569091727065 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.862672910866248 bayes_pls_golite062009
  • DNA binding
    		•  0.709052688292325 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.638097455363788 bayes_pls_golite062009
  • protein binding
    		•  0.606784236996154 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.548821113052527 bayes_pls_golite062009
  • structural molecule activity
    		•  0.366127650337533 bayes_pls_golite062009
  • catalytic activity
    		•  0.133319360419662 bayes_pls_golite062009
    2
    Term Confidence Notes
  • hydrolase activity
    		•  2.55157966585974 bayes_pls_golite062009
  • binding
    		•  1.41264401383678 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.569910969126728 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.568840867400671 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.568779924702229 bayes_pls_golite062009
  • nucleotide binding
    		•  0.564275755355315 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.546796591575762 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.543610140926125 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.540750418412449 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.517457589081898 bayes_pls_golite062009
  • ATP binding
    		•  0.1860481660648 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.152859582615242 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.138615225841109 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.030747546048349 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle