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Protein Overview: gi|50944003, gi|...

General Information:
Name(s) found: gi|50944003 [NCBI NR]
gi|35215184 [NCBI NR]
gi|35215045 [NCBI NR]
gi|215694402 [NCBI NR]
gi|115475838 [NCBI NR]
gi|113623484 [NCBI NR]
Description(s) found:
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  • gi|50944003|ref|XP_481529.1| putative poly(A)-binding protein [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica Group] [NCBI NR]
  • gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group] [NCBI NR]
  • putative poly(A)-binding protein [Oryza sativa (japonica cultivar-group)]gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa (japonica cultivar-group)]gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza [nrdb_11152004_Chlamydomonas]
  • putative polyadenylate-binding protein [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • Os08g0314800 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 660 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQVQAVPA AEGGGAPPQA NGVVAAGSAA AAAATFQATS LYVGDLDVSV QDAQLFDVFS  60
   61 QVGSVVSVRV CRDVNTRLSL GYAYVNFSSP ADAARALEML NFTPINGKPI RIMYSNRDPS 120
  121 SRKSGAANIF IKNLDKSIDN KALYDTFSVF GNILSCKVAT EMSGESKGYG FVQFELEEAA 180
  181 QNAISKLNGM LLNDKKVYVG PFVRKQEREN VSGNPKFNNV YVKNLSESTT EDNLKEIFGK 240
  241 FGPITSVVVM REGDGKSRCF GFVNFENPDD AARAVEDLNG KKFDDKEWYV CRAQKKSERE 300
  301 MELKEKFEKN IKEAADKNQG TNLYLKNLDD SIDDDEKLKE IFADFGTITS CKVMRDLNGV 360
  361 SKGSGFVAFK SAEDASRALV AMNGKMIGSK PLYVALAQRK EERRARLQAQ FSQMRPMVMP 420
  421 PSVAPRMPMY PPGVPGVGQQ LFYGQPPPAF VNPQPGFGFQ QHLIPGMRPS VGPIPNFVMP 480
  481 MVQQGQQPQR PAGRRAGTGG IQQPMPMGHQ QMLPRGSRGG YRYASGRGMP DNAFRGVGGL 540
  541 VPSPYEMGRM PLSDAGAPPQ VPIGALASAL ANSPPDQQRL MLGESLYPLV DQLEHDQAAK 600
  601 VTGMLLEMDQ TEVLHLIESP DALKAKVAEA MEVLRNAQQQ QANTPTDQLA ALTLSDGVVS 660
  661

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..210] PSI-BLAST 56.09691 Poly(A)-binding protein
    2 View Details [211..293] PSI-BLAST 3.39794 NMR Structure of RRM1 from Human Polypyrimidine Tract Binding Protein Isoform 1 (PTB1)
    3 View Details [294..435] FFAS03 4.74 No description for 2f3jA was found.
    4 View Details [436..581] PSI-BLAST 5.522879 Sec24
    5 View Details [582..660] PSI-BLAST 17.0 No description for 2dydA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  6.73097473547076 bayes_pls_golite062009
    		• 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
    		•  5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.92126426323641 bayes_pls_golite062009
  • snRNA binding
    		•  4.06596327298973 bayes_pls_golite062009
  • binding
    		•  3.64400841800969 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  3.11990160533699 bayes_pls_golite062009
  • U1 snRNA binding
    		•  3.02511982045347 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.93798024346416 bayes_pls_golite062009
  • poly(U) RNA binding
    		•  2.49013736906028 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.18211199677674 bayes_pls_golite062009
  • DNA binding
    		•  1.98418556946403 bayes_pls_golite062009
  • structural molecule activity
    		•  1.56454315220334 bayes_pls_golite062009
  • U2 snRNA binding
    		•  1.34078165372485 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • transcription factor activity
    		•  1.07843408116687 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.06887262556449 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.824614388276642 bayes_pls_golite062009
  • eukaryotic initiation factor 4G binding
    		•  0.597542453741953 bayes_pls_golite062009
  • transporter activity
    		•  0.417047632648771 bayes_pls_golite062009
  • hydrolase activity
    		•  0.389390547875764 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.383589644462932 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.288804044686487 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.00171911393626201 bayes_pls_golite062009
    2
    Term Confidence Notes
  • RNA binding
    		•  6.73097473547076 bayes_pls_golite062009
    		• 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
    		•  5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.92126426323641 bayes_pls_golite062009
  • snRNA binding
    		•  4.06596327298973 bayes_pls_golite062009
  • binding
    		•  3.64400841800969 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  3.11990160533699 bayes_pls_golite062009
  • U1 snRNA binding
    		•  3.02511982045347 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.93798024346416 bayes_pls_golite062009
  • poly(U) RNA binding
    		•  2.49013736906028 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.18211199677674 bayes_pls_golite062009
  • DNA binding
    		•  1.98418556946403 bayes_pls_golite062009
  • structural molecule activity
    		•  1.56454315220334 bayes_pls_golite062009
  • U2 snRNA binding
    		•  1.34078165372485 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • transcription factor activity
    		•  1.07843408116687 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.06887262556449 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.824614388276642 bayes_pls_golite062009
  • eukaryotic initiation factor 4G binding
    		•  0.597542453741953 bayes_pls_golite062009
  • transporter activity
    		•  0.417047632648771 bayes_pls_golite062009
  • hydrolase activity
    		•  0.389390547875764 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.383589644462932 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.288804044686487 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.00171911393626201 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle