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Protein Overview: RPE_SYNY3

General Information:
Name(s) found: RPE_SYNY3 [Swiss-Prot]
Description(s) found:
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  • gi|2829613|sp|P74061.3|RPE_SYNY3 RecName: Full=Ribulose-phosphate 3-epimerase; AltName: Full=Pentose-5-phosphate 3-epimerase; Short=PPE; AltName: Full=R5P3E [NCBI NR]
  • gi|1653221|dbj|BAA18137.1| pentose-5-phosphate-3-epimerase [Synechocystis sp. PCC 6803] [NCBI NR]
  • gi|16330729|ref|NP_441457.1| ribulose-phosphate 3-epimerase [Synechocystis sp. PCC 6803] [NCBI NR]
  • Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=rpe PE=1 SV=3 [Swiss-Prot]
  • pentose-5-phosphate-3-epimerase [Synechocystis sp. PCC 6803]gi|52695848|pdb|1TQJ|F Chain F, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Synechocystis To 1.6 Angstrom Resolutiongi|52695847|pdb|1TQJ|E Chain E, Crystal Structure Of D-Ribul [nrdb_11152004_Chlamydomonas]
  • pentose-5-phosphate-3-epimerase [Synechocystis sp. PCC 6803] [nr-271106-contam.fasta]
  • ribulose-phosphate 3-epimerase [Synechocystis sp. PCC 6803] [nr-271106-contam.fasta]
  • Ribulose-phosphate 3-epimerase (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E) [nr-271106-contam.fasta]
  • Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rpe PE=1 SV=3 [uniprot_sprot.fasta.20160308]
    • Organism: Synechocystis sp. PCC 6803
    Length: 230 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNIVVAPS ILSADFSRLG EEIKAVDEAG ADWIHVDVMD GRFVPNITIG PLIVDAIRPL  60
   61 TKKTLDVHLM IVEPEKYVED FAKAGADIIS VHVEHNASPH LHRTLCQIRE LGKKAGAVLN 120
  121 PSTPLDFLEY VLPVCDLILI MSVNPGFGGQ SFIPEVLPKI RALRQMCDER GLDPWIEVDG 180
  181 GLKPNNTWQV LEAGANAIVA GSAVFNAPNY AEAIAGVRNS KRPEPQLATV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..230] PSI-BLAST 61.30103 Crystal structure of D-ribulose 5-phosphate 3-epimerase from Synechocystis to 1.6 angstrom resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribulose-phosphate 3-epimerase activity
    		•  3.28372503209224 bayes_pls_golite062009
  • catalytic activity
    		•  2.44231061702877 bayes_pls_golite062009
  • intramolecular oxidoreductase activity
    		•  1.86158562896415 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, interconverting aldoses and ketoses
    		•  1.36492964250879 bayes_pls_golite062009
  • isomerase activity
    		•  0.935800409577999 bayes_pls_golite062009
  • racemase and epimerase activity, acting on carbohydrates and derivatives
    		•  0.764608070506109 bayes_pls_golite062009
  • orotidine-5'-phosphate decarboxylase activity
    		•  0.758594564254247 bayes_pls_golite062009
  • binding
    		•  0.595171555788202 bayes_pls_golite062009
  • racemase and epimerase activity
    		•  0.288948763149344 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  0.1100847613283 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.63

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle