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Protein Overview: gi|39997249, gi|...

General Information:
Name(s) found: gi|39997249 [NCBI NR]
gi|39984139 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|39997249|ref|NP_953200.1| single-strand binding protein [Geobacter sulfurreducens PCA] [NCBI NR]
  • gi|39984139|gb|AAR35527.1| single-strand binding protein [Geobacter sulfurreducens PCA] [NCBI NR]
    • Organism: Geobacter sulfurreducens PCA
    Length: 139 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [ISSLink to PubMed article]
    DNA replication [ISSLink to PubMed article]
    DNA recombination [ISSLink to PubMed article]
    Molecular Function: single-stranded DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLNRVELI GNLGRDPEIR YTPGGTAVAS FSLATSEKVK NKSGEWETRT EWHNIVLYAR  60
   61 LAEVAGEYLS KGKSVYLDGK LKTRKWQDRD GKDRYTTEII GDKLLMLGSK NGSIPDGSDD 120
  121 QPSNSQAHED IPHDDTDPF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..139] PSI-BLAST 46.69897 SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  2.26271782657431 bayes_pls_golite062009
  • binding
    		•  2.01819468874386 bayes_pls_golite062009
  • DNA binding
    		•  1.81052012500635 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  1.38758756313423 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.30327082958682 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.537716356194117 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.0989196136046104 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle