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Protein Overview: gi|39983587, gi|...

General Information:
Name(s) found: gi|39996706 [NCBI NR]
gi|39983587 [NCBI NR]
Description(s) found:
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  • gi|39996706|ref|NP_952657.1| ribose 5-phosphate isomerase B, putative [Geobacter sulfurreducens PCA] [NCBI NR]
  • gi|39983587|gb|AAR34980.1| ribose 5-phosphate isomerase B, putative [Geobacter sulfurreducens PCA] [NCBI NR]
  • ribose 5-phosphate isomerase B, putative [Geobacter sulfurreducens PCA]gi|39983587|gb|AAR34980.1| ribose 5-phosphate isomerase B, putative [Geobacter sulfurreducens PCA] [nrdb_11152004_Chlamydomonas]
  • ribose 5-phosphate isomerase B, putative [Geobacter sulfurreducens PCA] [nr-271106-contam.fasta]
    • Organism: Geobacter sulfurreducens PCA
    Length: 148 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: pentose-phosphate shunt [ISSLink to PubMed article]
    Molecular Function: ribose-5-phosphate isomerase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVVGSDHGG LELKEAVKRL LAERGETFED CGTDNGNSVD YPDFGIKVAR RVSNGEAGKG  60
   61 ILLCGTGIGM SIVANKFPRV RAALATDAFM ARMAKEHNNA NILVLGGRVL EEAVAREMVI 120
  121 AWLDGVYEGG RHQGRLDKIA ALERELMK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..148] PSI-BLAST 55.39794 Alternate ribose 5-phosphate isomerase B, RpiB

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribose-5-phosphate isomerase activity
    		•  5.69997185547565 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, interconverting aldoses and ketoses
    		•  4.04314332668154 bayes_pls_golite062009
  • intramolecular oxidoreductase activity
    		•  3.57097659815257 bayes_pls_golite062009
  • isomerase activity
    		•  2.42530141345385 bayes_pls_golite062009
  • catalytic activity
    		•  2.21687627610124 bayes_pls_golite062009
  • allose 6-phosphate isomerase activity
    		•  2.20293230847792 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle