YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983587, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983587, gi|....

Description	E-value	Query Range	Subject Range
gi\|20806675 - gi\|20806675\|ref\|NP_621846.1\| Ribose 5-phosphate isomerase RpiB [Thermoanaerobacter tengcongensis MB4... gi\|20806675, gi\|... - gi\|20806675\|ref\|NP_621846.1\| ribose 5-phosphate isomerase RpiB [Thermoanaerobacter tengcongensis MB4...	239.0	[0..1]	[148..155]
gi\|110683235, gi... - gi\|110802734\|ref\|YP_699473.1\| ribose-5-phosphate isomerase B [Clostridium perfringens SM101], gi\|110... gi\|18145863, gi\|... - gi\|18311180\|ref\|NP_563114.1\| ribose-5-phosphate isomerase B [Clostridium perfringens str. 13], gi\|18... gi\|110800386, gi... - gi\|110800386\|ref\|YP_696877.1\| ribose-5-phosphate isomerase B [Clostridium perfringens ATCC 13124], g... gi\|170711788, gi... - gi\|170711788\|gb\|EDT23970.1\| ribose 5-phosphate isomerase B [Clostridium perfringens B str. ATCC 3626... gi\|168213698, gi... - gi\|170714766\|gb\|EDT26948.1\| ribose 5-phosphate isomerase B [Clostridium perfringens CPE str. F4969],... gi\|168215827, gi... - gi\|182382193\|gb\|EDT79672.1\| ribose 5-phosphate isomerase B [Clostridium perfringens NCTC 8239], gi\|1...	238.0	[0..2]	[148..3]
gi\|25309787 - pir\|\|D97254 ribose 5-phosphate isomerase, RpiB [imported] - Clostridium acetobutylicum gi\|15896134, gi\|... - gi\|15896134\|ref\|NP_349483.1\| ribose-5-phosphate isomerase B [Clostridium acetobutylicum ATCC 824], g...	229.0	[0..2]	[147..3]
gi\|67873844, gi\|... - gi\|67873844\|ref\|ZP_00503831.1\| Ribose/galactose isomerase [Clostridium thermocellum ATCC 27405], gi\|... gi\|196251796, gi... - gi\|196251796\|ref\|ZP_03150462.1\| sugar-phosphate isomerase, RpiB/LacA/LacB family [Clostridium thermo...	229.0	[0..2]	[148..3]
gi\|83591208, gi\|... - gi\|83591208\|ref\|YP_431217.1\| ribose-5-phosphate isomerase [Moorella thermoacetica ATCC 39073], gi\|83...	227.0	[0..2]	[146..21]
gi\|78043323, gi\|... - gi\|78043323\|ref\|YP_361351.1\| ribose-5-phosphate isomerase B [Carboxydothermus hydrogenoformans Z-290...	224.0	[0..2]	[148..3]
gi\|166853011, gi... - gi\|167038771\|ref\|YP_001661756.1\| RpiB/LacA/LacB family sugar-phosphate isomerase [Thermoanaerobacter... gi\|76588730, gi\|... - gi\|76795962\|ref\|ZP_00778332.1\| Ribose/galactose isomerase:Ribose 5-phosphate isomerase B [Thermoanae... gi\|241884718, gi... - gi\|241902917\|ref\|ZP_04787647.1\| sugar-phosphate isomerase, RpiB/LacA/LacB family [Thermoanaerobacter... gi\|242231648, gi... - gi\|242256834\|ref\|ZP_04801717.1\| sugar-phosphate isomerase, RpiB/LacA/LacB family [Thermoanaerobacter...	224.0	[0..1]	[148..1]
gi\|106895273, gi... - gi\|158321593\|ref\|YP_001514100.1\| RpiB/LacA/LacB family sugar-phosphate isomerase [Alkaliphilus oreml...	223.0	[0..2]	[146..3]
gi\|89210215, gi\|... - gi\|89210215\|ref\|ZP_01188607.1\| Ribose/galactose isomerase:Ribose 5-phosphate isomerase B [Halothermo...	221.0	[0..2]	[144..177]
gi\|28202503, gi\|... - gi\|28210068\|ref\|NP_781012.1\| ribose-5-phosphate isomerase B [Clostridium tetani E88], gi\|28202503\|gb...	218.0	[0..2]	[148..3]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVVGSDHGG LELKEAVKRL LAERGETFED CGTDNGNSVD YPDFGIKVAR RVSNGEAGKG  60
   61 ILLCGTGIGM SIVANKFPRV RAALATDAFM ARMAKEHNNA NILVLGGRVL EEAVAREMVI 120
  121 AWLDGVYEGG RHQGRLDKIA ALERELMK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.39794
Match:	1nn4A
Description:	Alternate ribose 5-phosphate isomerase B, RpiB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribose-5-phosphate isomerase activity	5.69997185547565	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	4.04314332668154	bayes_pls_golite062009
intramolecular oxidoreductase activity	3.57097659815257	bayes_pls_golite062009
isomerase activity	2.42530141345385	bayes_pls_golite062009
catalytic activity	2.21687627610124	bayes_pls_golite062009
allose 6-phosphate isomerase activity	2.20293230847792	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: