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Protein Overview: PAL1_ARATH

General Information:
Name(s) found: PAL1_ARATH [Swiss-Prot]
Description(s) found:
Found 19 descriptions.
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  • Phenylalanine ammonia-lyase 1 OS=Arabidopsis thaliana GN=PAL1 PE=1 SV=3 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 725 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEA]
    Biological Process: response to oxidative stress [IEP]
    phenylpropanoid biosynthetic process [TAS]
    response to wounding [TAS]
    defense response [TAS]
    Molecular Function: phenylalanine ammonia-lyase activity [ISS][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF  60
   61 RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN ASSDWVMESM NKGTDSYGVT 120
  121 TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF 180
  181 SGIRFEILEA ITSFLNNNIT PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA 240
  241 LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA 300
  301 EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY 360
  361 ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR NKAIHGGNFQ GTPIGVSMDN 420
  421 TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY 480
  481 LANPVTSHVQ SAEQHNQDVN SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN 540
  541 LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ 600
  601 KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR 660
  661 IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA ICEGKIIDPM MECLNEWNGA 720
  721 PIPIC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..725] PSI-BLAST 1000.0 Phenylalanine ammonia-lyase (PAL) from Petroselinum crispum

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • histidine ammonia-lyase activity
    		•  3.53226750625841 bayes_pls_golite062009
  • catalytic activity
    		•  2.51282259572665 bayes_pls_golite062009
  • lyase activity
    		•  2.31268471569846 bayes_pls_golite062009
  • carbon-nitrogen lyase activity
    		•  2.2046475419807 bayes_pls_golite062009
  • amidine-lyase activity
    		•  0.901614580251298 bayes_pls_golite062009
  • argininosuccinate lyase activity
    		•  0.617974375213548 bayes_pls_golite062009
  • ammonia-lyase activity
    		•  0.491229595527877 bayes_pls_golite062009
  • fumarate hydratase activity
    		•  0.364320954362762 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle