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Protein Overview: gi|24376232, gi|...

General Information:
Name(s) found: gi|24376232 [NCBI NR]
gi|24344697 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24376232|ref|NP_720340.1| replication protein RepA [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24344697|gb|AAN52940.1| plasmid replication protein RepA [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 293 amino acids

    Gene Ontology:
    Cellular Component: extrachromosomal circular DNA [ISSLink to PubMed article]
    Biological Process: DNA replication [ISSLink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRSENALLP IPVTENLNSG KLLTISSTTS VQPNVLLRTG VFTPVGRRTN ANDVKAQDLS  60
   61 NDLVNLDVCQ KEGYDLVTVR GQRLNIETDF KVWCGIVLVF SKYGYSSNTV KLTFSEFAKF 120
  121 CSYPSRRFDK NLRKQIGDSL GRIQSQSLSF RRKNSEKAVH TGMLLRAMYD GEEDIVELMA 180
  181 DETLWDLYRL DYQVLVSLRV LEKLPRAEVA QCLYLYFTSL PENPHPVSFE RLRERLRLET 240
  241 SKKEANRKIK TGIQKLESIG YLSGSFAVKN GEQYYLIDQR YKKLEAAITG SLF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..293] FFAS03 3.78 RepE54

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  2.85334044543318 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.8293727459515 bayes_pls_golite062009
  • DNA binding
    		•  2.66906990480864 bayes_pls_golite062009
  • binding
    		•  2.14387047687719 bayes_pls_golite062009
  • transcription factor activity
    		•  1.97506348695089 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.665091289283954 bayes_pls_golite062009
  • transcription activator activity
    		•  0.542530812773621 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.423955395883599 bayes_pls_golite062009
  • protein binding
    		•  0.0300097532511948 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle