YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: URDA_SHEON

General Information:
Name(s) found: URDA_SHEON [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
SHOW ALL
  • Urocanate reductase OS=Shewanella oneidensis (strain MR-1) GN=urdA PE=1 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 582 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: anaerobic respiration [ISSLink to PubMed article]
    tricarboxylic acid cycle [ISSLink to PubMed article]
    Molecular Function: succinate dehydrogenase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHYKKSIIGI AVTATAIIAG CQVTHQIVKS QGTAQGKHGE VQVETTFKDG HIVAIDVLKQ  60
   61 KENKVLAGAV FKDVKQAIID NNSIEVDGIA GATVTSKALK EAVGKSIEAA GVTLVATASA 120
  121 KKSEALTPAE YTYDVVIIGS GGAGFSAGLE AIAAGRSAVI IEKMPIIGGN SLISGAEMNV 180
  181 AGSWVQKNMG ITDSKELFIS DTLKGGDFKG DPEMVKTMVD NAVGAAEWLR DYVKVEFYPD 240
  241 QLFQFGGHSV KRALIPKGHT GAEVISKFSI KADEVGLPIH TNTKAEKLIQ DQTGRIVGVE 300
  301 AAHNGKTITY HAKRGVVIAT GGFSSNMEMR KKYNPELDER YGSTGHAGGT GDGIVMAEKI 360
  361 HAAAKNMGYI QSYPICSPTS GAIALIADSR FFGAVLINQK GERFVEELER RDVISHAILA 420
  421 QPGRYTYVLW NQDIENVAHT VEMHQGELKE FTKDGLMYKV DTLEEAAKVF NIPEDKLLST 480
  481 IKDVNHYAAT GKDEAFNHRS GLVDLSKGPY WILKATPSVH HTMGGLVVDT RTRVLDEQGK 540
  541 VIPGLFAAGE VTGLTHGTNR LGGNAYTDII VYGRIAGQEA AK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..90] PSI-BLAST 17.221849 The Crystal Structure and Reaction Mechanism of E. coli 2,4-Dienoyl CoA Reductase
    2 View Details [91..582] PSI-BLAST 73.0 Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain; Flavocytochrome c3 (respiratory fumarate reductase)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • succinate dehydrogenase activity
    		•  4.66525249592263 bayes_pls_golite062009
  • succinate dehydrogenase (ubiquinone) activity
    		•  3.70791057697947 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor
    		•  3.70791057697947 bayes_pls_golite062009
  • oxidoreductase activity
    		•  3.25470541847124 bayes_pls_golite062009
  • electron carrier activity
    		•  2.8553929424231 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  2.84060092432585 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors
    		•  2.78793325009909 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor
    		•  2.26549080531565 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors
    		•  2.11247286526577 bayes_pls_golite062009
  • catalytic activity
    		•  1.75556359035561 bayes_pls_golite062009
  • dihydrolipoyl dehydrogenase activity
    		•  1.73872135285388 bayes_pls_golite062009
  • binding
    		•  1.41440014472974 bayes_pls_golite062009
  • L-aspartate oxidase activity
    		•  1.05451533139646 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors
    		•  0.798505263716232 bayes_pls_golite062009
  • aspartate oxidase activity
    		•  0.702496262873056 bayes_pls_golite062009
  • fumarate reductase (NADH) activity
    		•  0.65260793370113 bayes_pls_golite062009
  • succinate-CoA ligase activity
    		•  0.468246082354334 bayes_pls_golite062009
  • coenzyme binding
    		•  0.44036421821989 bayes_pls_golite062009
  • protein binding
    		•  0.159209309982354 bayes_pls_golite062009
  • oxygen-dependent protoporphyrinogen oxidase activity
    		•  0.1498172520052 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle