YRC Public Data Repository - Protein Structure Prediction

Protein:	URDA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	582 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for URDA_SHEON.

Description	E-value	Query Range	Subject Range
gi\|82721457, gi\|... - gi\|82741188\|ref\|ZP_00903915.1\| Flavocytochrome c [Shewanella sp. W3-18-1], gi\|82721457\|gb\|EAP56296.1... gi\|145566567, gi... - gi\|77813791\|ref\|ZP_00813064.1\| Flavocytochrome c [Shewanella putrefaciens CN-32], gi\|77811297\|gb\|EAO...	357.0	[0..1]	[582..1]
gi\|28210528, gi\|... - gi\|28210528\|ref\|NP_781472.1\| fumarate reductase flavoprotein subunit precursor [Clostridium tetani E...	338.0	[0..6]	[581..16]
gi\|117922435, gi... - gi\|78684459\|ref\|ZP_00849243.1\| Flavocytochrome c [Shewanella sp. ANA-3], gi\|78507791\|gb\|EAP21300.1\| ...	335.0	[0..1]	[582..1]
gi\|153002691, gi... - gi\|153002691\|ref\|YP_001368372.1\| flavocytochrome c [Shewanella baltica OS185], gi\|151367309\|gb\|ABS10... gi\|113947436, gi... - gi\|160877427\|ref\|YP_001556743.1\| flavocytochrome c [Shewanella baltica OS195], gi\|160862949\|gb\|ABX51...	330.0	[0..1]	[582..1]
gi\|158139640, gi... - gi\|158319441\|ref\|YP_001511948.1\| flavocytochrome c [Alkaliphilus oremlandii OhILAs], gi\|158139640\|gb...	320.0	[0..27]	[581..42]
gi\|19713472, gi\|... - gi\|19713472\|gb\|AAL94263.1\| Fumarate reductase flavoprotein subunit [Fusobacterium nucleatum subsp. n...	316.0	[0..21]	[581..7]
gi\|160430669, gi... - gi\|160882003\|ref\|YP_001560971.1\| flavocytochrome c [Clostridium phytofermentans ISDg], gi\|160430669\|...	314.0	[0..4]	[582..12]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHYKKSIIGI AVTATAIIAG CQVTHQIVKS QGTAQGKHGE VQVETTFKDG HIVAIDVLKQ  60
   61 KENKVLAGAV FKDVKQAIID NNSIEVDGIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.221849
Match:	1ps9A
Description:	The Crystal Structure and Reaction Mechanism of E. coli 2,4-Dienoyl CoA Reductase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [91-582]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GATVTSKALK EAVGKSIEAA GVTLVATASA KKSEALTPAE YTYDVVIIGS GGAGFSAGLE  60
   61 AIAAGRSAVI IEKMPIIGGN SLISGAEMNV AGSWVQKNMG ITDSKELFIS DTLKGGDFKG 120
  121 DPEMVKTMVD NAVGAAEWLR DYVKVEFYPD QLFQFGGHSV KRALIPKGHT GAEVISKFSI 180
  181 KADEVGLPIH TNTKAEKLIQ DQTGRIVGVE AAHNGKTITY HAKRGVVIAT GGFSSNMEMR 240
  241 KKYNPELDER YGSTGHAGGT GDGIVMAEKI HAAAKNMGYI QSYPICSPTS GAIALIADSR 300
  301 FFGAVLINQK GERFVEELER RDVISHAILA QPGRYTYVLW NQDIENVAHT VEMHQGELKE 360
  361 FTKDGLMYKV DTLEEAAKVF NIPEDKLLST IKDVNHYAAT GKDEAFNHRS GLVDLSKGPY 420
  421 WILKATPSVH HTMGGLVVDT RTRVLDEQGK VIPGLFAAGE VTGLTHGTNR LGGNAYTDII 480
  481 VYGRIAGQEA AK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.0
Match:	1qo8A
Description:	Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain; Flavocytochrome c3 (respiratory fumarate reductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase activity	4.66525249592263	bayes_pls_golite062009
succinate dehydrogenase (ubiquinone) activity	3.70791057697947	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor	3.70791057697947	bayes_pls_golite062009
oxidoreductase activity	3.25470541847124	bayes_pls_golite062009
electron carrier activity	2.8553929424231	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	2.84060092432585	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	2.78793325009909	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	2.26549080531565	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	2.11247286526577	bayes_pls_golite062009
catalytic activity	1.75556359035561	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	1.73872135285388	bayes_pls_golite062009
binding	1.41440014472974	bayes_pls_golite062009
L-aspartate oxidase activity	1.05451533139646	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	0.798505263716232	bayes_pls_golite062009
aspartate oxidase activity	0.702496262873056	bayes_pls_golite062009
fumarate reductase (NADH) activity	0.65260793370113	bayes_pls_golite062009
succinate-CoA ligase activity	0.468246082354334	bayes_pls_golite062009
coenzyme binding	0.44036421821989	bayes_pls_golite062009
protein binding	0.159209309982354	bayes_pls_golite062009
oxygen-dependent protoporphyrinogen oxidase activity	0.1498172520052	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: