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Protein Overview: gi|24350277, gi|...

General Information:
Name(s) found: gi|24376022 [NCBI NR]
gi|24375433 [NCBI NR]
gi|24351028 [NCBI NR]
gi|24350277 [NCBI NR]
Description(s) found:
Found 6 descriptions.
SHOW ALL
  • gi|24376022|ref|NP_720065.1| IS110 family transposase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24375433|ref|NP_719476.1| IS110 family transposase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24351028|gb|AAN57509.1|AE015887_5 transposase, IS110 family [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350277|gb|AAN56920.1|AE015826_5 transposase, IS110 family [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 344 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transposition, DNA-mediated [ISSLink to PubMed article]
    Molecular Function: transposase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYKLISIDL AKTVFQVAAF NPDNTIAFNR KINRPALLDM LRQCEPTLVV MEACYSANYW  60
   61 GRTIEKLGHT VKLIPARMVK AMLVGNKNDA NDAVAIGETA GRPKVSLLRP KTVEQQDIQS 120
  121 LLRIRERLVE NRTANCNQLR GFLAEYGLIV AKTRRQLMLA IPLILEDADN ELSTVARGFI 180
  181 QRLYEFQLYL NEQIDQVAQD ILALAQAMPQ YPLLLTIPGV GPIVASTLLA SINEVNDFKN 240
  241 GRQLAAWLGL TPSQYSSGTT NRLGKITKRG NQTLRRLLIH GARTVVNWCD KKDDSLSLWL 300
  301 QRLKQRQHVC KVTVALANKM ARMVFVVMSR GQAFDMNKAC KLAT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..73] MSA 10.510997 View MSA. No confident structure predictions are available.
    2 View Details [74..168] Pfam 4.585027 No description for PF01548.8 was found. No confident structure predictions are available.
    3 View Details [169..266] FFAS03 1.07 No description for 2eduA was found.
    4 View Details [267..344] MSA 13.565996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • four-way junction helicase activity
    		•  2.35387472829506 bayes_pls_golite062009
  • catalytic activity
    		•  1.81606732001648 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  1.51242104001728 bayes_pls_golite062009
  • hydrolase activity
    		•  1.44295617237855 bayes_pls_golite062009
  • DNA helicase activity
    		•  1.410406915122 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  1.37458225605855 bayes_pls_golite062009
  • helicase activity
    		•  0.797360394952021 bayes_pls_golite062009
  • excinuclease ABC activity
    		•  0.11092713120065 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle