YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350277, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	344 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350277, gi|....

Description	E-value	Query Range	Subject Range
gi\|91189927, gi\|... - gi\|91225288\|ref\|ZP_01260456.1\| putative IS1328 transposase [Vibrio alginolyticus 12G01], gi\|91189927...	293.0	[0..3]	[335..4]
gi\|77460038, gi\|... - gi\|77460038\|ref\|YP_349545.1\| transposase IS116/IS110/IS902 [Pseudomonas fluorescens Pf0-1], gi\|77384...	292.0	[0..6]	[340..7]
gi\|28901109, gi\|... - gi\|28901109\|ref\|NP_800764.1\| putative IS1328 transposase [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|28809622 - gi\|28809622\|dbj\|BAC62597.1\| putative IS1328 transposase [Vibrio parahaemolyticus RIMD 2210633]	291.0	[0..3]	[335..4]
gi\|91794157, gi\|... - gi\|91794708\|ref\|YP_564359.1\| transposase IS116/IS110/IS902 [Shewanella denitrificans OS217], gi\|9179...	291.0	[0..1]	[337..1]
gi\|121556081, gi... - gi\|121611441\|ref\|YP_999248.1\| transposase IS116/IS110/IS902 family protein [Verminephrobacter eiseni...	287.0	[0..1]	[342..1]
gi\|194432438, gi... - gi\|194432438\|ref\|ZP_03064725.1\| transposase, IS1111 family [Shigella dysenteriae 1012], gi\|194419325... gi\|15808754 - gi\|15808754\|gb\|AAL08483.1\| IS1328 transposase [Shigella flexneri 2a]	287.0	[0..2]	[336..3]
gi\|84713657, gi\|... - gi\|84713657\|ref\|ZP_01021344.1\| probable transposase [Polaromonas naphthalenivorans CJ2], gi\|84694405...	286.0	[0..1]	[340..1]
gi\|77815693, gi\|... - gi\|77815693\|ref\|ZP_00814917.1\| Transposase [Shewanella putrefaciens CN-32], gi\|77809341\|gb\|EAO93742....	285.0	[0..1]	[343..1]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYKLISIDL AKTVFQVAAF NPDNTIAFNR KINRPALLDM LRQCEPTLVV MEACYSANYW  60
   61 GRTIEKLGHT VKL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [74-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPARMVKAML VGNKNDANDA VAIGETAGRP KVSLLRPKTV EQQDIQSLLR IRERLVENRT  60
   61 ANCNQLRGFL AEYGLIVAKT RRQLMLAIPL ILEDA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	4.585027
Match:	PF01548.8
Description:	No description for PF01548.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [169-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNELSTVARG FIQRLYEFQL YLNEQIDQVA QDILALAQAM PQYPLLLTIP GVGPIVASTL  60
   61 LASINEVNDF KNGRQLAAWL GLTPSQYSSG TTNRLGKI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.07
Match:	2eduA
Description:	No description for 2eduA was found.

Predicted functions:

Term	Confidence	Notes
four-way junction helicase activity	2.35387472829506	bayes_pls_golite062009
catalytic activity	1.81606732001648	bayes_pls_golite062009
deoxyribonuclease activity	1.51242104001728	bayes_pls_golite062009
hydrolase activity	1.44295617237855	bayes_pls_golite062009
DNA helicase activity	1.410406915122	bayes_pls_golite062009
endodeoxyribonuclease activity	1.37458225605855	bayes_pls_golite062009
helicase activity	0.797360394952021	bayes_pls_golite062009
excinuclease ABC activity	0.11092713120065	bayes_pls_golite062009

Predicted Domain #4

Region A:
Residues: [267-344]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKRGNQTLRR LLIHGARTVV NWCDKKDDSL SLWLQRLKQR QHVCKVTVAL ANKMARMVFV  60
   61 VMSRGQAFDM NKACKLAT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: