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Protein Overview: gi|24375993, gi|...

General Information:
Name(s) found: gi|24375993 [NCBI NR]
gi|24350994 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24375993|ref|NP_720036.1| ferric vibriobactin receptor [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350994|gb|AAN57480.1|AE015884_2 ferric vibriobactin receptor [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 685 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: siderophore-iron transport [ISSLink to PubMed article]
    Molecular Function: siderophore-iron transmembrane transporter activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCKAFKKST IAAIVSSLLI SSAYAAADAE SSEPIERITV YGEKIERSLK DTTSSISVID  60
   61 KETLDSGQYQ STSSALSEVP NVVVLSGSVP DIRGVSGNGS ASGFNSFTGG ARARVSTLVD 120
  121 GVAEPFVADL SGDTGLWDIQ QIEVFRGPQS TINGRNSIGG TVFIKTEDPT FDWQGAARVG 180
  181 YRDQDNFIDS AVMLSGPILD DELAFRVSGQ NVTGETYNKG LEYPTNPATF DQNELITNRW 240
  241 RGKFLWQPSA IEDLKVLYSL SYNDEKGDSG RNYFTGDDPW AYKPIFQRYI ETKSTTHSVK 300
  301 VDYELGEGQA FDLIVAYMDY NWGFESYEAL ATAQQYVDMK DKSYTVDGKY SFGLKDKDFN 360
  361 GFVGLAYFKR SQDFGSTGSS IYSGDDSTKS ASVYGEVTYG LADSLWITVG GRVMREEQLR 420
  421 NFTMLYQGSQ LLEKLDDANT VTLPKLVLQY ALNDNTTLAA SVRRGYNSGG GALSLVESEY 480
  481 YYYDEEFVNT YELSSRSAFA NGDVNLSANL FYNDFDGYQA SNSARKITNI DKAVSYGVEA 540
  541 EFSAMLTENW QFISGVGLLD SEIKQADPSY GDIIGNQLNS APHVTANAGL KYWLSDAFSF 600
  601 GFAGHYVGEY FADINNTESR VAGDYVVARV SLDYQTDSWR VSGFVNNLFD EQAMTVNEPA 660
  661 SRSYPDGYAA IIDPRNIGVS AMYRF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..685] PSI-BLAST 71.30103 Ferric hydroxamate uptake receptor FhuA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  4.15398171369398 bayes_pls_golite062009
  • transition metal ion transmembrane transporter activity
    		•  3.71720155502729 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  3.51478170290895 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  3.41811856763345 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  3.35817595849318 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  3.29933669641504 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  2.88478677770584 bayes_pls_golite062009
  • iron ion transmembrane transporter activity
    		•  2.78006545332604 bayes_pls_golite062009
  • di-, tri-valent inorganic cation transmembrane transporter activity
    		•  2.64234123687059 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.43332676180972 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.99898520864149 bayes_pls_golite062009
  • binding
    		•  0.895613726661701 bayes_pls_golite062009
  • channel activity
    		•  0.491712690153616 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.491712690153616 bayes_pls_golite062009
  • iron ion binding
    		•  0.248363677949459 bayes_pls_golite062009
  • protein binding
    		•  0.230368843489798 bayes_pls_golite062009
  • lipid transporter activity
    		•  0.10911346172326 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle