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Protein Overview: gi|24350779, gi|...

General Information:
Name(s) found: gi|24375825 [NCBI NR]
gi|24350779 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24375825|ref|NP_719868.1| threonine dehydratase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350779|gb|AAN57312.1|AE015867_11 threonine dehydratase [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 545 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: isoleucine biosynthetic process [ISSLink to PubMed article]
    Molecular Function: L-threonine ammonia-lyase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLASSQTE QAESQPAQAS PASVEKSQLA QHYLQKILLS SVYDVAKVTP LSSLNKLSAR  60
   61 LGCQVFLKRE DMQPVHSFKL RGAYNRIAQL SQAECQRGVV CASAGNHAQG VAMSAASRGV 120
  121 DAVIVMPETT PDIKVDAVRR LGGNVVLHGQ AFDQANGFAM TMAQQEGRVY IAPFDDEAVI 180
  181 AGQGTIAQEM LQQQRDLEVI FVPVGGGGLI AGIAAYYKAV MPQVKIVGVE PEDAACLKAA 240
  241 MEAGEPVTLS QVGLFADGVA VKRIGTEPFR VAKLCVDAVV TVTSDEICAA VKDIFEDTRA 300
  301 IAEPAGALSL AGLKKYVSTN ATGESGRGEK VAAILSGANV NFHSLRYVSE RCELGEQKEA 360
  361 VLAVKVPERP GSFLRFCELL EKRVMTEFNY RFSSRDMAVV FAGIRLTKGH GELEQIINTL 420
  421 EDNGFEVQDL SGDETAKLHV RYMVGGHPPE PLEERLFSFE FPEHPGALLK FLTTLQSKWN 480
  481 ISLFHYRNHG AAFGRVLAGF EVPASDALPF QQFLTELGFV YQEETQSPAY QLFLNAGKGK 540
  541 NNLPV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..545] PSI-BLAST 150.0 THREONINE DEAMINASE (BIOSYNTHETIC) FROM E. COLI

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • acetolactate synthase activity
    		•  6.50887202511626 bayes_pls_golite062009
  • transferase activity, transferring aldehyde or ketonic groups
    		•  5.28856942236052 bayes_pls_golite062009
  • threonine racemase activity
    		•  4.44340924206787 bayes_pls_golite062009
  • threonine synthase activity
    		•  3.59927532963055 bayes_pls_golite062009
  • cysteine synthase activity
    		•  3.57860549303214 bayes_pls_golite062009
  • L-threonine ammonia-lyase activity
    		•  3.33109959091277 bayes_pls_golite062009
  • carbon-oxygen lyase activity, acting on phosphates
    		•  2.61572425646119 bayes_pls_golite062009
  • tryptophan synthase activity
    		•  1.99526226543975 bayes_pls_golite062009
  • lyase activity
    		•  1.87743897464083 bayes_pls_golite062009
  • binding
    		•  1.14906798355281 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  0.923824749425553 bayes_pls_golite062009
  • catalytic activity
    		•  0.645256181736122 bayes_pls_golite062009
  • ammonia-lyase activity
    		•  0.476674617721478 bayes_pls_golite062009
  • protein binding
    		•  0.341967829237094 bayes_pls_golite062009
  • carbon-nitrogen lyase activity
    		•  0.249761226675912 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.248470717905239 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.69

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle