YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350779, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	545 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350779, gi|....

Description	E-value	Query Range	Subject Range
gi\|152989630, gi... - gi\|94414836\|ref\|ZP_01294690.1\| hypothetical protein PaerP_01003416 [Pseudomonas aeruginosa PA7], gi\|...	580.0	[0..29]	[535..1]
gi\|218889072, gi... - gi\|218889072\|ref\|YP_002437936.1\| threonine dehydratase [Pseudomonas aeruginosa LESB58], gi\|218769295... gi\|11352637 - pir\|\|F83603 threonine dehydratase, biosynthetic PA0331 [imported] - Pseudomonas aeruginosa (strain P... gi\|254237434, gi... - gi\|84318487\|ref\|ZP_00966910.1\| COG1171: Threonine dehydratase [Pseudomonas aeruginosa C3719], gi\|254... gi\|254243429, gi... - gi\|84324414\|ref\|ZP_00972472.1\| COG1171: Threonine dehydratase [Pseudomonas aeruginosa 2192], gi\|2542... gi\|15595528, gi\|... - gi\|9946179\|gb\|AAG03720.1\|AE004471_3 threonine dehydratase, biosynthetic [Pseudomonas aeruginosa PAO1... gi\|107099314 - gi\|107099314\|ref\|ZP_01363232.1\| hypothetical protein PaerPA_01000326 [Pseudomonas aeruginosa PACS2]	577.0	[0..29]	[535..1]
gi\|116054058, gi... - gi\|53727080\|ref\|ZP_00140763.2\| COG1171: Threonine dehydratase [Pseudomonas aeruginosa UCBPP-PA14], g...	577.0	[0..29]	[535..1]
gi\|78686127, gi\|... - gi\|78686127\|ref\|ZP_00850898.1\| Threonine dehydratase I [Shewanella sp. ANA-3], gi\|78506091\|gb\|EAP196...	576.0	[0..1]	[545..1]
gi\|77868036, gi\|... - gi\|77953083\|ref\|ZP_00817494.1\| Threonine dehydratase I [Marinobacter aquaeolei VT8], gi\|77868036\|gb\|...	574.0	[0..29]	[541..1]
gi\|87281645, gi\|... - gi\|87303848\|ref\|ZP_01086553.1\| threonine dehydratase [Synechococcus sp. WH 5701], gi\|87281645\|gb\|EAQ...	574.0	[0..29]	[542..1]
gi\|90413761, gi\|... - gi\|90413761\|ref\|ZP_01221749.1\| threonine dehydratase [Photobacterium profundum 3TCK], gi\|90325230\|gb...	572.0	[0..31]	[534..16]
gi\|113890590, gi... - gi\|78690045\|ref\|ZP_00854698.1\| Threonine dehydratase I [Shewanella sp. MR-7], gi\|78510572\|gb\|EAP2394...	571.0	[0..1]	[545..1]
gi\|82406486, gi\|... - gi\|82495602\|ref\|ZP_00881177.1\| Threonine dehydratase I [Shewanella sp. MR-4], gi\|82406486\|gb\|EAP4715...	569.0	[0..1]	[545..1]
gi\|54310634, gi\|... - gi\|54310634\|ref\|YP_131654.1\| threonine dehydratase [Photobacterium profundum SS9], gi\|46915077\|emb\|C...	567.0	[0..31]	[534..16]

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Predicted Domain #1

Region A:
Residues: [1-545]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLASSQTE QAESQPAQAS PASVEKSQLA QHYLQKILLS SVYDVAKVTP LSSLNKLSAR  60
   61 LGCQVFLKRE DMQPVHSFKL RGAYNRIAQL SQAECQRGVV CASAGNHAQG VAMSAASRGV 120
  121 DAVIVMPETT PDIKVDAVRR LGGNVVLHGQ AFDQANGFAM TMAQQEGRVY IAPFDDEAVI 180
  181 AGQGTIAQEM LQQQRDLEVI FVPVGGGGLI AGIAAYYKAV MPQVKIVGVE PEDAACLKAA 240
  241 MEAGEPVTLS QVGLFADGVA VKRIGTEPFR VAKLCVDAVV TVTSDEICAA VKDIFEDTRA 300
  301 IAEPAGALSL AGLKKYVSTN ATGESGRGEK VAAILSGANV NFHSLRYVSE RCELGEQKEA 360
  361 VLAVKVPERP GSFLRFCELL EKRVMTEFNY RFSSRDMAVV FAGIRLTKGH GELEQIINTL 420
  421 EDNGFEVQDL SGDETAKLHV RYMVGGHPPE PLEERLFSFE FPEHPGALLK FLTTLQSKWN 480
  481 ISLFHYRNHG AAFGRVLAGF EVPASDALPF QQFLTELGFV YQEETQSPAY QLFLNAGKGK 540
  541 NNLPV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	150.0
Match:	1tdjA
Description:	THREONINE DEAMINASE (BIOSYNTHETIC) FROM E. COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acetolactate synthase activity	6.50887202511626	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	5.28856942236052	bayes_pls_golite062009
threonine racemase activity	4.44340924206787	bayes_pls_golite062009
threonine synthase activity	3.59927532963055	bayes_pls_golite062009
cysteine synthase activity	3.57860549303214	bayes_pls_golite062009
L-threonine ammonia-lyase activity	3.33109959091277	bayes_pls_golite062009
carbon-oxygen lyase activity, acting on phosphates	2.61572425646119	bayes_pls_golite062009
tryptophan synthase activity	1.99526226543975	bayes_pls_golite062009
lyase activity	1.87743897464083	bayes_pls_golite062009
binding	1.14906798355281	bayes_pls_golite062009
carbon-oxygen lyase activity	0.923824749425553	bayes_pls_golite062009
catalytic activity	0.645256181736122	bayes_pls_golite062009
ammonia-lyase activity	0.476674617721478	bayes_pls_golite062009
protein binding	0.341967829237094	bayes_pls_golite062009
carbon-nitrogen lyase activity	0.249761226675912	bayes_pls_golite062009
transcription regulator activity	0.248470717905239	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: