YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|24375565, gi|...

General Information:
Name(s) found: gi|24375565 [NCBI NR]
gi|24350450 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24375565|ref|NP_719608.1| pmba protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350450|gb|AAN57052.1|AE015839_1 pmba protein [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 447 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: bacteriocin biosynthetic process [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNRIDSEL TALKDAVAVA LEYANKLGTN AAEVAISKQQ GLSVSTRLKE VETVEFNKDG  60
   61 ALGITVYRDG CKGSSSTSDL SPEAIALAVK AADDIARYTS ADPFSGLADK ALMATEIRDL 120
  121 KLYYPQEISA DELAQLAIRA ETAALDADPR INNSDGASAN AHTSVKVYGN SHGFLNGYCS 180
  181 SRYSLSCSVI GEDRNGNMQR DYDYTIARKF NEMLSPESVG LKTAEKTVSR LGARKIATTR 240
  241 LPILLAPEIA TGLIGHLIGA ISGGSLYRKS SFLLDAIHTQ IFPDWFSIEE QPHLLGALAS 300
  301 ANYDSEGVAT QDRRIIDRGM LETYLLTSYS ARKLSLPNTG HAGGIYNWTL AHTGQGFDEL 360
  361 VKGMGTGLIV TEVMGQGVNM VTGDYSRGAA GFYVENGEVQ FPVEEITIAG NLKDMFRGIQ 420
  421 AVSKDFDLRS SIRTGGILLS EMKVAGN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..447] PSI-BLAST 92.09691 Crystal structure of Putative modulator of DNA gyrase (bt3649) from Bacteriodes thetaiotaomicron vpi-5482 at 1.75 A resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  0.844669254385544 bayes_pls_golite062009
  • catalytic activity
    		•  0.55839241827268 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.0121152486203551 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.58

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle