YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375565, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	447 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375565, gi|....

Description	E-value	Query Range	Subject Range
gi\|37527907, gi\|... - gi\|37527907\|ref\|NP_931252.1\| peptidase PmbA [Photorhabdus luminescens subsp. laumondii TTO1], gi\|367...	475.0	[0..1]	[446..1]
gi\|74314712, gi\|... - gi\|74314712\|ref\|YP_313131.1\| peptidase PmbA [Shigella sonnei Ss046], gi\|73858189\|gb\|AAZ90896.1\| PmbB...	469.0	[0..3]	[446..8]
gi\|253976066, gi... - gi\|254164163\|ref\|YP_003047273.1\| predicted peptidase required for the maturation and secretion of th... gi\|253775140, gi... - gi\|254290913\|ref\|YP_003056663.1\| predicted peptidase required for the maturation and secretion of th... gi\|75258337, gi\|... - gi\|75258337\|ref\|ZP_00729768.1\| COG0312: Predicted Zn-dependent proteases and their inactivated homol... gi\|75212210 - gi\|75212210\|ref\|ZP_00712250.1\| COG0312: Predicted Zn-dependent proteases and their inactivated homol... gi\|83586736 - gi\|83586736\|ref\|ZP_00925368.1\| COG0312: Predicted Zn-dependent proteases and their inactivated homol... gi\|251787484, gi... - gi\|251787484\|ref\|YP_003001788.1\| hypothetical protein B21_04067 [Escherichia coli BL21], gi\|24237975...	469.0	[0..3]	[446..8]
gi\|168774048, gi... - gi\|187770300\|gb\|EDU34144.1\| protein PmbA [Escherichia coli O157:H7 str. EC4196], gi\|168774048\|ref\|ZP... gi\|168760484, gi... - gi\|189368971\|gb\|EDU87387.1\| protein PmbA [Escherichia coli O157:H7 str. EC4501], gi\|168760484\|ref\|ZP... gi\|15834466, gi\|... - gi\|15834466\|ref\|NP_313239.1\| peptidase PmbA [Escherichia coli O157:H7 str. Sakai], gi\|13364689\|dbj\|B... gi\|168797809, gi... - gi\|189379559\|gb\|EDU97975.1\| protein PmbA [Escherichia coli O157:H7 str. EC508], gi\|168797809\|ref\|ZP_... PMBA_ECO57 - Metalloprotease PmbA OS=Escherichia coli O157:H7 GN=pmbA PE=3 SV=1 gi\|189374994, gi... - gi\|189374994\|gb\|EDU93410.1\| protein PmbA [Escherichia coli O157:H7 str. EC869], gi\|168784879\|ref\|ZP_... EG10741 - putative antibiotic peptide MccB17 maturation peptidase / Probable peptidase required for the matura... gi\|15804825, gi\|... - gi\|15804825\|ref\|NP_290866.1\| peptidase PmbA [Escherichia coli O157:H7 EDL933], gi\|12519236\|gb\|AAG594... PMBA_ECOLI - Protein pmbA (Protein tldE) - Escherichia coli gi\|218434941, gi... - gi\|218707844\|ref\|YP_002415363.1\| peptidase PmbA [Escherichia coli UMN026], gi\|218434941\|emb\|CAR15880... gi\|189010551, gi... - gi\|189010551\|ref\|ZP_02807763.2\| protein PmbA [Escherichia coli O157:H7 str. EC4076], gi\|188999818\|gb... gi\|170083677, gi... - gi\|170083677\|ref\|YP_001732997.1\| peptidase required for the maturation and secretion of the antibiot... gi\|208740815, gi... - gi\|208820692\|ref\|ZP_03261012.1\| protein PmbA [Escherichia coli O157:H7 str. EC4042], gi\|208740815\|gb... gi\|208813458, gi... - gi\|208813458\|ref\|ZP_03254787.1\| protein PmbA [Escherichia coli O157:H7 str. EC4045], gi\|208734735\|gb... gi\|218561395, gi... - gi\|218561395\|ref\|YP_002394308.1\| peptidase PmbA [Escherichia coli S88], gi\|218368164\|emb\|CAR05973.1\|... gi\|218363554, gi... - gi\|218556785\|ref\|YP_002389699.1\| peptidase PmbA [Escherichia coli IAI1], gi\|218363554\|emb\|CAR01209.1... gi\|218702938, gi... - gi\|218702938\|ref\|YP_002410567.1\| peptidase PmbA [Escherichia coli IAI39], gi\|218372924\|emb\|CAR20806.... gi\|218697985, gi... - gi\|218697985\|ref\|YP_002405652.1\| peptidase PmbA [Escherichia coli 55989], gi\|218354717\|emb\|CAV01759.... gi\|238903339, gi... - gi\|238903339\|ref\|YP_002929135.1\| putative peptidase required for the maturation and secretion of the... gi\|254796254, gi... - gi\|254796254\|ref\|YP_003081091.1\| predicted peptidase required for the maturation and secretion of th... gi\|85676985, gi\|... - gi\|89110954\|ref\|AP_004734.1\| predicted peptidase required for the maturation and secretion of the an... gi\|75198086 - gi\|75198086\|ref\|ZP_00708156.1\| COG0312: Predicted Zn-dependent proteases and their inactivated homol... EG10741 - putative antibiotic peptide MccB17 maturation peptidase / Probable peptidase required for the matura... gi\|75188948 - gi\|75188948\|ref\|ZP_00702215.1\| COG0312: Predicted Zn-dependent proteases and their inactivated homol... gi\|75179336 - gi\|75179336\|ref\|ZP_00699340.1\| COG0312: Predicted Zn-dependent proteases and their inactivated homol...	469.0	[0..3]	[446..8]
gi\|83569392 - gi\|83569392\|ref\|ZP_00920846.1\| COG0312: Predicted Zn-dependent proteases and their inactivated homol...	468.0	[0..3]	[446..8]
gi\|191167268, gi... - gi\|75229606\|ref\|ZP_00716145.1\| COG0312: Predicted Zn-dependent proteases and their inactivated homol... gi\|124528297, gi... - gi\|124528297\|ref\|ZP_01699621.1\| peptidase U62, modulator of DNA gyrase [Escherichia coli B], gi\|1245... gi\|169756682, gi... - gi\|170021754\|ref\|YP_001726708.1\| peptidase PmbA [Escherichia coli ATCC 8739], gi\|169756682\|gb\|ACA793... gi\|75235456, gi\|... - gi\|75235456\|ref\|ZP_00719664.1\| COG0312: Predicted Zn-dependent proteases and their inactivated homol...	468.0	[0..3]	[446..8]
gi\|110644596, gi... - gi\|110644596\|ref\|YP_672326.1\| peptidase PmbA [Escherichia coli 536], gi\|110346188\|gb\|ABG72425.1\| Pmb... gi\|75242377 - gi\|75242377\|ref\|ZP_00726139.1\| COG0312: Predicted Zn-dependent proteases and their inactivated homol...	468.0	[0..3]	[446..8]
gi\|82546518, gi\|... - gi\|82546518\|ref\|YP_410465.1\| peptidase PmbA [Shigella boydii Sb227], gi\|81247929\|gb\|ABB68637.1\| PmbA...	468.0	[0..3]	[446..8]
gi\|82779296, gi\|... - gi\|82779296\|ref\|YP_405645.1\| peptidase PmbA [Shigella dysenteriae Sd197], gi\|81243444\|gb\|ABB64154.1\|...	468.0	[0..3]	[446..8]
gi\|75515472 - gi\|75515472\|ref\|ZP_00737629.1\| COG0312: Predicted Zn-dependent proteases and their inactivated homol...	467.0	[0..3]	[446..8]

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Predicted Domain #1

Region A:
Residues: [1-447]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNRIDSEL TALKDAVAVA LEYANKLGTN AAEVAISKQQ GLSVSTRLKE VETVEFNKDG  60
   61 ALGITVYRDG CKGSSSTSDL SPEAIALAVK AADDIARYTS ADPFSGLADK ALMATEIRDL 120
  121 KLYYPQEISA DELAQLAIRA ETAALDADPR INNSDGASAN AHTSVKVYGN SHGFLNGYCS 180
  181 SRYSLSCSVI GEDRNGNMQR DYDYTIARKF NEMLSPESVG LKTAEKTVSR LGARKIATTR 240
  241 LPILLAPEIA TGLIGHLIGA ISGGSLYRKS SFLLDAIHTQ IFPDWFSIEE QPHLLGALAS 300
  301 ANYDSEGVAT QDRRIIDRGM LETYLLTSYS ARKLSLPNTG HAGGIYNWTL AHTGQGFDEL 360
  361 VKGMGTGLIV TEVMGQGVNM VTGDYSRGAA GFYVENGEVQ FPVEEITIAG NLKDMFRGIQ 420
  421 AVSKDFDLRS SIRTGGILLS EMKVAGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.09691
Match:	1vpbA
Description:	Crystal structure of Putative modulator of DNA gyrase (bt3649) from Bacteriodes thetaiotaomicron vpi-5482 at 1.75 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	0.844669254385544	bayes_pls_golite062009
catalytic activity	0.55839241827268	bayes_pls_golite062009
transcription repressor activity	0.0121152486203551	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: