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Protein Overview: SSB_SHEON

General Information:
Name(s) found: SSB_SHEON [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • Single-stranded DNA-binding protein OS=Shewanella oneidensis (strain MR-1) GN=ssb PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 238 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [ISSLink to PubMed article]
    DNA replication [ISSLink to PubMed article]
    DNA recombination [ISSLink to PubMed article]
    Molecular Function: single-stranded DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRGVNKVI LVGNLGQDPE VRYMPNGNAV ANITVATSES WKDQQGQQQE RTEWHRVVLF  60
   61 GKLAEITGEY LRKGSQVYLE GKLQTRKWKD QSGQDRYSTE VVIDQSGSMQ MLGSRNQGGQ 120
  121 GAPMGGMPQN GGYQSAPQQA APAQNQYAPA PQAAPAYQAP APQPQSGYNQ PPAQQSYGQQ 180
  181 QAQPHVQPHA QPQQGGYAPK PAAPAYQAPA APAQRPAPQP QQNFTPDLDD GWDDDIPF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..165] PSI-BLAST 36.522879 SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX
    2 View Details [166..238] FFAS03 1.17 SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  2.26271782657431 bayes_pls_golite062009
  • binding
    		•  2.01819468874386 bayes_pls_golite062009
  • DNA binding
    		•  1.81052012500635 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  1.38758756313423 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.30327082958682 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.537716356194117 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.0989196136046104 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle