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Protein Overview: gi|24375348, gi|...

General Information:
Name(s) found: gi|24375348 [NCBI NR]
gi|24350166 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24375348|ref|NP_719391.1| cyclic nucleotide phosphodiesterase, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350166|gb|AAN56835.1|AE015818_11 cyclic nucleotide phosphodiesterase, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 631 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: biological_process [ND]
    Molecular Function: cyclic-nucleotide phosphodiesterase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSYPRYLAV FLLIIGQSCL AFAEEQPQVG QLFKLFDSGE SMPRATIEQN IALLEKLISS  60
   61 DDIERIEKLN QIKCWNQASD TEEEIAKALN YAEQALSQIP STASTHFITD INLCRAWFLQ 120
  121 LTGDINGAME GYTKSVQSAY EHEDIKLIAD ARSLRGALYS YTGDFSEALD DLVTAQGLYE 180
  181 SLNLTGWANI NLTDIATSFR RYGDPESAIK YYKKLKELYL KNGNKEQVAN VMSEIGIALD 240
  241 EMGKHEQAIE HFRFSYQYFK DQKLNIVAAI NATNIAYSLI QLNRLDEAEN YLNEAAPDIS 300
  301 ENEPAAYSFM KLFMGKIRNQ QGRYQEALDE LSAAEHAFRV MHNDRGLIQL LQLKSDIYAA 360
  361 MEDLPQAYHI LQEFIALTKK VDDSSIAHQT TELKVKFDTS WIESENKRLI DNQKLKEQEL 420
  421 TLLEKNKSLQ LIILLLTGCI LATVSLFAYK QVHRNRQLQT IALTDYLTQL PNRRHIYAQA 480
  481 EQYFQLALKQ QIPFSIIIFD ADHFKKINDN FGHEIGDQAL LTIAEASKTL TTDRNLVGRI 540
  541 GGEEFLILLP NTDADRAWKL AHELQTLITR FGAINLPVEL KLTVSAGVAT LPIQSELQDQ 600
  601 NFARLLKRAD NALYEAKNAG RNCVKAAEIT G

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..335] PSI-BLAST 3.69897 Transcription factor MalT domain III
    2 View Details [336..380] FFAS03 1.07 No description for 2ifuA was found.
    3 View Details [381..631] PSI-BLAST 48.045757 Response regulator PleD in complex with c-diGMP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0016189620256075 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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