YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375348, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	631 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375348, gi|....

Description	E-value	Query Range	Subject Range
gi\|83310313, gi\|... - gi\|83310313\|ref\|YP_420577.1\| signal transduction protein [Magnetospirillum magneticum AMB-1], gi\|829...	248.0	[0..361]	[627..341]
gi\|77637613, gi\|... - gi\|77686586\|ref\|ZP_00801926.1\| GGDEF [Alkaliphilus metalliredigenes QYMF], gi\|77637613\|gb\|EAO80061.1...	246.0	[0..4]	[625..117]
gi\|42525094, gi\|... - gi\|42525094\|ref\|NP_970474.1\| hypothetical protein Bd3766 [Bdellovibrio bacteriovorus HD100], gi\|3957...	238.0	[0..13]	[626..51]
gi\|89347106, gi\|... - gi\|89902369\|ref\|YP_524840.1\| diguanylate cyclase with PAS/PAC sensor [Rhodoferax ferrireducens T118]...	236.0	[0..346]	[629..456]
gi\|67098006, gi\|... - gi\|67668432\|ref\|ZP_00465584.1\| PAS:GGDEF [Burkholderia cenocepacia HI2424], gi\|67098006\|gb\|EAM15264....	235.0	[0..346]	[629..479]
gi\|68513171, gi\|... - gi\|68560640\|ref\|ZP_00599951.1\| PAS:GGDEF [Rubrobacter xylanophilus DSM 9941], gi\|68513171\|gb\|EAN3696...	235.0	[0..359]	[628..554]
gi\|53757982, gi\|... - gi\|53804221\|ref\|YP_114116.1\| sensory box protein [Methylococcus capsulatus str. Bath], gi\|53757982\|g...	234.0	[0..363]	[629..811]
gi\|116698703, gi... - gi\|71547021\|ref\|ZP_00667737.1\| PAS:GGDEF [Syntrophobacter fumaroxidans MPOB], gi\|71487272\|gb\|EAO1972...	233.0	[0..363]	[630..309]

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Predicted Domain #1

Region A:
Residues: [1-335]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSYPRYLAV FLLIIGQSCL AFAEEQPQVG QLFKLFDSGE SMPRATIEQN IALLEKLISS  60
   61 DDIERIEKLN QIKCWNQASD TEEEIAKALN YAEQALSQIP STASTHFITD INLCRAWFLQ 120
  121 LTGDINGAME GYTKSVQSAY EHEDIKLIAD ARSLRGALYS YTGDFSEALD DLVTAQGLYE 180
  181 SLNLTGWANI NLTDIATSFR RYGDPESAIK YYKKLKELYL KNGNKEQVAN VMSEIGIALD 240
  241 EMGKHEQAIE HFRFSYQYFK DQKLNIVAAI NATNIAYSLI QLNRLDEAEN YLNEAAPDIS 300
  301 ENEPAAYSFM KLFMGKIRNQ QGRYQEALDE LSAAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	1hz4A
Description:	Transcription factor MalT domain III
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0016189620256075	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [336-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HAFRVMHNDR GLIQLLQLKS DIYAAMEDLP QAYHILQEFI ALTKK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.07
Match:	2ifuA
Description:	No description for 2ifuA was found.

Predicted Domain #3

Region A:
Residues: [381-631]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDDSSIAHQT TELKVKFDTS WIESENKRLI DNQKLKEQEL TLLEKNKSLQ LIILLLTGCI  60
   61 LATVSLFAYK QVHRNRQLQT IALTDYLTQL PNRRHIYAQA EQYFQLALKQ QIPFSIIIFD 120
  121 ADHFKKINDN FGHEIGDQAL LTIAEASKTL TTDRNLVGRI GGEEFLILLP NTDADRAWKL 180
  181 AHELQTLITR FGAINLPVEL KLTVSAGVAT LPIQSELQDQ NFARLLKRAD NALYEAKNAG 240
  241 RNCVKAAEIT G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.045757
Match:	1w25A
Description:	Response regulator PleD in complex with c-diGMP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: