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Protein Overview: gi|24349772, gi|...

General Information:
Name(s) found: gi|24375029 [NCBI NR]
gi|24349772 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24375029|ref|NP_719072.1| type IV pilin biogenesis protein, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349772|gb|AAN56516.1|AE015789_3 type IV pilin biogenesis protein, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 1168 amino acids

    Gene Ontology:
    Cellular Component: pilus [ISSLink to PubMed article]
    Biological Process: pilus assembly [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIKKLTFCT LLALASTSIS SFGDDTELYV KESSTRTGAR PKVLVIFDNS GSMSTEEITQ  60
   61 VVDYDPDYDY PPLSGSGYSG DRIYYTVGGG ALPTPDTTSD RRYFNATING CNQSKVALDQ 120
  121 FGRFTGYIRE FTSSGTTGVW KEFPETDGRN IKVVDCWEDI STVDPQNSSP YSNGFPANGL 180
  181 TTGSGKNKKA FPYNTSSSPG TTWANALAAA KNTGFGVGQP VTFYTDNYLR WYWLSKEGRL 240
  241 PTIKVPRIDI AKKAISNIIR STPTVDFGLA VFNYNYPNEG NRDGGRIVSG ITQMTDTSRA 300
  301 SLLSTIDGLP AKTNTPLCET MYEAYRYFAG KGVVFGHADT DYGSYVGNRP PYDNSVETNG 360
  361 TYVSPFKVCT DIAYVIYVTD GSPTVDGSAN NNVKTLTAAA SKSGNYSSFS QGLSTPSYLP 420
  421 ALASYMFNND LINKPDSSNT EQMQNVRTYT IGFSKGADDA APLLAETAKR GGGLYFAAQN 480
  481 SLELQNALND ALSNILNIDS SFTSPSIASN NFDRTQTFDA AYYAMFLPGK GPRWSGNLKK 540
  541 LRVTADGTLV DGEGNAAIAD NGNIKETACT IWTDCTSQKD GNKVEVGGAA AQLRGQLNRT 600
  601 ILSNLAGTSS LSPLTLSNAQ NAAGGEQALA TFMRTDIDEV ANTLDWLKGI DVDDDNKNGS 660
  661 ITDKRNDVMG DPLHSKPLAL NFGSETATDI RIILGTNQGV LHMFKDAGES VSETWGFIPY 720
  721 ELLPNLIELR TNDPSGVHTV YGMDSSPVAY TETDSTGKVN KAWVFVGMQR GGSSYYALDV 780
  781 SNPDSPSLMW TINPSSDGFV DLGQTWSEPI VTKIVGYDKP VLIFGGGYDE SFDATPTTSP 840
  841 QGRAIYIVDA QKGTLIHSFG GSASGATVLP GIQGSIPNSV AVLDSNNDGY TDRIYASDVT 900
  901 GNIWRMDLPT ASSGTWTAFK FASLGGSNSD NRRFFAEPVV AQTMFTNLSE VSVTTGTETV 960
  961 TTKTHQNVPY DAVAVGSGMR SSPSSTNVND MFFMLQDRNV VTKSFTGSNV PATITINNLY1020
 1021 DVTSSAPTSE TDNINFGTKF GWFYDFSGLG EKSLTAALIV QGKVYFTSYS PPADSVADNV1080
 1081 CLVSGAGKLY AFDLHKGTRS FSQLYYELGE RVPDTPQIVI PAPETGKDPY IYIIGVGKGD1140
 1141 INENGEYSGT INVASGLGVN KIYYHIDE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..214] deduced N/A No confident structure predictions are available.
    2 View Details [215..528] FFAS03 1.33 A domain of Factor B
    3 View Details [529..1168] FFAS03 1.58 Ethanol dehydrogenase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.89538247378914 bayes_pls_golite062009
  • protein binding
    		•  1.63531186889342 bayes_pls_golite062009
  • integrin binding
    		•  1.02164178373931 bayes_pls_golite062009
  • cell adhesion molecule binding
    		•  0.550539875200409 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  1.13877867632656 bayes_pls_golite062009
  • catalytic activity
    		•  0.758809445273203 bayes_pls_golite062009
  • protein binding
    		•  0.625570058903235 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle