YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349772, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	1168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349772, gi|....

Description	E-value	Query Range	Subject Range
gi\|78686641, gi\|... - gi\|78686641\|ref\|ZP_00851406.1\| type IV pilin biogenesis protein, putative [Shewanella sp. ANA-3], gi...	1127.0	[0..1]	[1168..1]
gi\|160859805, gi... - gi\|160874283\|ref\|YP_001553599.1\| type IV pilin biogenesis protein, putative [Shewanella baltica OS19...	1114.0	[0..1]	[1168..1]
gi\|125996510, gi... - gi\|68544150\|ref\|ZP_00583820.1\| type IV pilin biogenesis protein, putative [Shewanella baltica OS155]...	1101.0	[0..1]	[1168..1]
gi\|78691525, gi\|... - gi\|78691525\|ref\|ZP_00856136.1\| similar to Tfp pilus assembly protein tip-associated adhesin PilY1 [S...	903.0	[0..2]	[1168..41]
gi\|82404467, gi\|... - gi\|82497544\|ref\|ZP_00883077.1\| similar to Tfp pilus assembly protein tip-associated adhesin PilY1 [S...	902.0	[0..2]	[1168..41]
gi\|11352777 - pir\|\|D83076 type 4 fimbrial biogenesis protein PilY1 PA4554 [imported] - Pseudomonas aeruginosa (str... PILY1_PSEAE - Type IV pilus biogenesis factor PilY1 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS...	814.0	[0..2]	[1149..13]
gi\|91794067, gi\|... - gi\|91794067\|ref\|YP_563718.1\| type IV pilin biogenesis protein, putative [Shewanella denitrificans OS...	777.0	[0..1]	[1168..1]
gi\|78365731, gi\|... - gi\|78365731\|ref\|ZP_00836016.1\| type IV pilin biogenesis protein, putative [Shewanella sp. PV-4], gi\|...	775.0	[0..3]	[1167..27]
gi\|1246302\|gb\|AA... - pilY1 gene product gi\|1246302, gi\|7... - pir\|\|S72645 pilY1 protein - Pseudomonas aeruginosa, gi\|1246302\|gb\|AAA93502.1\| pilY1 [Pseudomonas ae...	771.0	[0..2]	[1136..53]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIKKLTFCT LLALASTSIS SFGDDTELYV KESSTRTGAR PKVLVIFDNS GSMSTEEITQ  60
   61 VVDYDPDYDY PPLSGSGYSG DRIYYTVGGG ALPTPDTTSD RRYFNATING CNQSKVALDQ 120
  121 FGRFTGYIRE FTSSGTTGVW KEFPETDGRN IKVVDCWEDI STVDPQNSSP YSNGFPANGL 180
  181 TTGSGKNKKA FPYNTSSSPG TTWANALAAA KNTG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [215-528]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGVGQPVTFY TDNYLRWYWL SKEGRLPTIK VPRIDIAKKA ISNIIRSTPT VDFGLAVFNY  60
   61 NYPNEGNRDG GRIVSGITQM TDTSRASLLS TIDGLPAKTN TPLCETMYEA YRYFAGKGVV 120
  121 FGHADTDYGS YVGNRPPYDN SVETNGTYVS PFKVCTDIAY VIYVTDGSPT VDGSANNNVK 180
  181 TLTAAASKSG NYSSFSQGLS TPSYLPALAS YMFNNDLINK PDSSNTEQMQ NVRTYTIGFS 240
  241 KGADDAAPLL AETAKRGGGL YFAAQNSLEL QNALNDALSN ILNIDSSFTS PSIASNNFDR 300
  301 TQTFDAAYYA MFLP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.33
Match:	1q0pA
Description:	A domain of Factor B
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.89538247378914	bayes_pls_golite062009
protein binding	1.63531186889342	bayes_pls_golite062009
integrin binding	1.02164178373931	bayes_pls_golite062009
cell adhesion molecule binding	0.550539875200409	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [529-1168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKGPRWSGNL KKLRVTADGT LVDGEGNAAI ADNGNIKETA CTIWTDCTSQ KDGNKVEVGG  60
   61 AAAQLRGQLN RTILSNLAGT SSLSPLTLSN AQNAAGGEQA LATFMRTDID EVANTLDWLK 120
  121 GIDVDDDNKN GSITDKRNDV MGDPLHSKPL ALNFGSETAT DIRIILGTNQ GVLHMFKDAG 180
  181 ESVSETWGFI PYELLPNLIE LRTNDPSGVH TVYGMDSSPV AYTETDSTGK VNKAWVFVGM 240
  241 QRGGSSYYAL DVSNPDSPSL MWTINPSSDG FVDLGQTWSE PIVTKIVGYD KPVLIFGGGY 300
  301 DESFDATPTT SPQGRAIYIV DAQKGTLIHS FGGSASGATV LPGIQGSIPN SVAVLDSNND 360
  361 GYTDRIYASD VTGNIWRMDL PTASSGTWTA FKFASLGGSN SDNRRFFAEP VVAQTMFTNL 420
  421 SEVSVTTGTE TVTTKTHQNV PYDAVAVGSG MRSSPSSTNV NDMFFMLQDR NVVTKSFTGS 480
  481 NVPATITINN LYDVTSSAPT SETDNINFGT KFGWFYDFSG LGEKSLTAAL IVQGKVYFTS 540
  541 YSPPADSVAD NVCLVSGAGK LYAFDLHKGT RSFSQLYYEL GERVPDTPQI VIPAPETGKD 600
  601 PYIYIIGVGK GDINENGEYS GTINVASGLG VNKIYYHIDE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.58
Match:	1flgA
Description:	Ethanol dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.13877867632656	bayes_pls_golite062009
catalytic activity	0.758809445273203	bayes_pls_golite062009
protein binding	0.625570058903235	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: