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Protein Overview: gi|24374963, gi|...

General Information:
Name(s) found: gi|24374963 [NCBI NR]
gi|24349687 [NCBI NR]
Description(s) found:
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  • gi|24374963|ref|NP_719006.1| sensor histidine kinase/response regulator [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349687|gb|AAN56450.1|AE015782_2 sensor histidine kinase/response regulator [Shewanella oneidensis MR-1] [NCBI NR]
  • sensor histidine kinase/response regulator [Shewanella oneidensis MR-1]gi|24349687|gb|AAN56450.1| sensor histidine kinase/response regulator [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • sensor histidine kinase/response regulator [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 929 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: two-component signal transduction system (phosphorelay) [ISSLink to PubMed article]
    Molecular Function: two-component sensor activity [ISSLink to PubMed article]
    two-component response regulator activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKYSLRSWV LVLALAPTIL VGILLGSYFT INRFYELEDT LIEQGSNIIE PLAIASEVGL  60
   61 VGNDREATKR LLAAAQLNKS TLVKSIAIFD IHNQLFVTSH YHKDFEIMRY KEALTNLQKT 120
  121 EIEHVGDSLI LRTPIFATAT PTGSEPANVD IQTDNGELLG YISVIINKER ALLEQHRAAV 180
  181 AAFIIVLIGV QLNLLFTFRL VKNVTQPITE MVRVVAKIRE GKLDARLQGN LIGELDLLKR 240
  241 GINAMAGSLS EYHDEMQQNI DQATSDLRET LEQIEIQNVE LDLAKKRALE ASRIKSEFLA 300
  301 NMSHELRTPL NGVIGFARQL VKTPLHSSQV DYINTIERSA TNLLAIINDI LDFSKLEAGK 360
  361 MVLESMPFGL RETLGETITL ISGSAQAKGL ELVVDIAPNV PDNVNGDSMR VCQIINNLVG 420
  421 NAIKFTDSGS VLVKLELQAQ TDEQVVLRCD VIDTGIGIDE SQQDFLFQAF GQADSSISRR 480
  481 FGGTGLGLVI TKRLVNQMGG QIGFTSSVDK GSNFWFTLPL GLGQFQIGDS LPLEKLQNKT 540
  541 VLFYEPRVLT HSVISRQLKQ WDTKVTHHQH IPSLQTTLST TEHQFDYVLL SCHGFNNPNH 600
  601 LVSTLIQAKA KTDCLIVLFD CQEQDMLSQF IRPNADVVLS LPVSEHQLAR NMLYPPMEYD 660
  661 LLPPVSIAVP AARQSLTVLA VDDNFANLKL IDTLLNELVT TVIAVNSGEE AVKQAKTRTF 720
  721 DLIFMDIQMP GTDGISATKQ IRQGSMNRNT PIIAVTAHAI AEERELILGS GMDGYLPKPI 780
  781 DEAALKAEIN RWITRPKFTH FDLHTLNWDL CLTQANHKSG LALDMLRMLL DSLPQTVSAI 840
  841 EAALSQNDQV TMLSTIHKLH GASCYCGVPT TQRLCQEIES ALKREARVED LEPEILELLD 900
  901 ELTKVESAAK QVLSQLSAEI TDDQKNGLL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..136] deduced N/A No confident structure predictions are available.
    2 View Details [137..268] FFAS03 3.74 M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
    3 View Details [269..530] PSI-BLAST 51.30103 Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
    4 View Details [531..811] PSI-BLAST 27.0 Response regulator PleD in complex with c-diGMP
    5 View Details [812..929] PSI-BLAST 45.045757 No description for 2oqrA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • two-component response regulator activity
    		•  7.02872640261738 bayes_pls_golite062009
  • signal transducer activity
    		•  4.51666042720644 bayes_pls_golite062009
  • molecular transducer activity
    		•  4.51666042720644 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.44888100104099 bayes_pls_golite062009
  • protein histidine kinase activity
    		•  2.35011582062573 bayes_pls_golite062009
  • two-component sensor activity
    		•  2.32303301074957 bayes_pls_golite062009
  • phosphotransferase activity, nitrogenous group as acceptor
    		•  2.28838869071567 bayes_pls_golite062009
  • protein kinase activity
    		•  2.08303977202039 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  1.84345371541189 bayes_pls_golite062009
  • kinase activity
    		•  1.7325547043888 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.47952516519975 bayes_pls_golite062009
  • binding
    		•  1.22427537074115 bayes_pls_golite062009
  • DNA binding
    		•  1.11037597107903 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.05519146337499 bayes_pls_golite062009
  • transferase activity
    		•  0.826951625983535 bayes_pls_golite062009
  • transcription factor activity
    		•  0.62886970109503 bayes_pls_golite062009
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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