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Protein Overview: gi|24349606, gi|...

General Information:
Name(s) found: gi|24374902 [NCBI NR]
gi|24349606 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374902|ref|NP_718945.1| ATP-dependent protease, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349606|gb|AAN56389.1|AE015775_6 ATP-dependent protease, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 806 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: proteolysis [ISSLink to PubMed article]
    Molecular Function: ATP-dependent peptidase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTVPTVVPA IPLTSQQIYR RSELQQLSAE CHSTAQLTPL DDIVGQERAQ QAVEFAMGIK  60
   61 EKGYNIYAIG QNGLGKRTMM LRYLNRHDPI EPALFDWCYV VNFDDTRSPK VLKLTAGTGL 120
  121 EFKKSIEKLM LKLVRALPLA FDNEMYYARA EKLKSQLTQK QEAVLTELSE EAKQKNISLS 180
  181 LTMQGDYQMI ALNGDEPHDE ATFSALTEAE RNQFESNING LEVKLRSIIR QNTEWEEEFS 240
  241 DTQQEHDEQV AKDVLVHFFK PLKDKYKHQP DVRAFLTGMQ ADILSNLDIF LEESEEQLAL 300
  301 AYASLEKKMP RRYQVNVLVS QGEQKYPIVV EESPSYHSLF GYVENATFRG TVFTDFSLIR 360
  361 PGSLHKANGG VLLMDAIKVL ERPYVWDGLK RALRSRKLDL SSLEREVSLS GTISLAPEPI 420
  421 PLDVKIILFG DHETYQLLQH YDADFIELFR VTADFEDVMD RSDASEAHYA RFISSIVHDN 480
  481 NMLHCDRSAI ARIIEYSSRE AQDQQKLSLH SANIANLLRE SNFCAKAVSS KRIEKQHVEQ 540
  541 ALKNQQKRVS RLHDNIMESF VNGTTLINTH DKVVGQINAL SVVSTSEHQF GLPNRITATT 600
  601 AYGKGEVLDI EHRVKLGGRI HSKGVLILTA YLASVLGKTA QIPLTTYLTF EQSYSGVDGD 660
  661 SASMAECCAI ISAISELPLR QDIAITGSMN QFGEAQPIGG VNEKIEGFFD VCQIKGRTSS 720
  721 QGVIIPESNI ANLMLRQDIV EAVERGEFHI WAINHVTQAM TLLLGKTAAT VQTNESKHID 780
  781 QYAPECIFGI AQQKLNALRA LSKTNS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] PSI-BLAST 18.39794 Crystal structure of N-terminal domain of E.Coli Lon Protease
    2 View Details [118..560] PSI-BLAST 46.69897 Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state
    3 View Details [561..806] PSI-BLAST 37.0 Catalytic domain of E.coli Lon protease

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.161174898429323 bayes_pls_golite062009
  • catalytic activity
    		•  0.147263815852997 bayes_pls_golite062009
    2
    Term Confidence Notes
  • hydrolase activity
    		•  2.01139211432094 bayes_pls_golite062009
  • two-component response regulator activity
    		•  1.38287298974817 bayes_pls_golite062009
  • signal transducer activity
    		•  1.06286887680363 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.06286887680363 bayes_pls_golite062009
  • binding
    		•  1.05015914982969 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.337096034207063 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.33688241622626 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.335459976383557 bayes_pls_golite062009
  • nucleotide binding
    		•  0.326346376039545 bayes_pls_golite062009
    3
    Term Confidence Notes
  • hydrolase activity
    		•  1.01457954640976 bayes_pls_golite062009
  • catalytic activity
    		•  0.878454819018611 bayes_pls_golite062009
  • peptidase activity
    		•  0.725583683426111 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.42204457347635 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle