YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349606, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	806 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349606, gi|....

Description	E-value	Query Range	Subject Range
gi\|78509870, gi\|... - gi\|78690737\|ref\|ZP_00855377.1\| ATP-dependent protease, putative [Shewanella sp. MR-7], gi\|78509870\|g...	436.0	[0..1]	[805..1]
gi\|78687302, gi\|... - gi\|78687302\|ref\|ZP_00852054.1\| ATP-dependent protease, putative [Shewanella sp. ANA-3], gi\|78504951\|...	436.0	[0..1]	[805..1]
gi\|82497602, gi\|... - gi\|82497602\|ref\|ZP_00883134.1\| ATP-dependent protease, putative [Shewanella sp. MR-4], gi\|82404428\|g...	435.0	[0..1]	[805..1]
gi\|37201460, gi\|... - gi\|37676916\|ref\|NP_937312.1\| ATP-dependent protease [Vibrio vulnificus YJ016], gi\|37201460\|dbj\|BAC97...	428.0	[0..8]	[800..11]
gi\|194535979, gi... - gi\|75824843\|ref\|ZP_00754287.1\| COG1067: Predicted ATP-dependent protease [Vibrio cholerae RC385], gi... gi\|148876603, gi... - gi\|153827758\|ref\|ZP_01980425.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887660... tr\|D7HBH5\|D7HBH5... - Putative uncharacterized protein OS=Vibrio cholerae RC385 GN=VCRC385_02694 PE=4 SV=1	427.0	[0..8]	[800..1]
gi\|229340482, gi... - gi\|229522497\|ref\|ZP_04411913.1\| ATP-dependent protease La Type II [Vibrio cholerae TM 11079-80], gi\|... gi\|194538180, gi... - gi\|75821010\|ref\|ZP_00751046.1\| COG1067: Predicted ATP-dependent protease [Vibrio cholerae V51], gi\|2...	427.0	[0..8]	[800..1]
gi\|153801817, gi... - gi\|153801817\|ref\|ZP_01956403.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124122651... gi\|75817084, gi\|... - gi\|75817084\|ref\|ZP_00747539.1\| COG1067: Predicted ATP-dependent protease [Vibrio cholerae V52], gi\|1... gi\|227015621, gi... - gi\|75825174\|ref\|ZP_00754610.1\| COG1067: Predicted ATP-dependent protease [Vibrio cholerae O395], gi\|... tr\|A0A085RIG7\|A0... - Uncharacterized protein OS=Vibrio cholerae GN=DN30_148 PE=4 SV=1, Uncharacterized protein OS=Vibrio ... gi\|153824704, gi... - gi\|153824704\|ref\|ZP_01977371.1\| peptidase S16, lon domain protein [Vibrio cholerae MZO-2], gi\|149741... gi\|229514384, gi... - gi\|229514384\|ref\|ZP_04403845.1\| ATP-dependent protease La Type II [Vibrio cholerae TMA 21], gi\|22934...	426.0	[0..8]	[800..1]
gi\|28809895, gi\|... - gi\|28901348\|ref\|NP_801003.1\| ATP-dependent protease LA-related protein [Vibrio parahaemolyticus RIMD... gi\|28809895 - gi\|28809895\|dbj\|BAC62836.1\| ATP-dependent protease LA-related protein [Vibrio parahaemolyticus RIMD ...	426.0	[0..8]	[800..1]
gi\|11354425 - pir\|\|H82392 ATP-dependent LA-related proteinase VCA0975 [imported] - Vibrio cholerae (strain N16961 ... gi\|229352703, gi... - gi\|229510258\|ref\|ZP_04399738.1\| ATP-dependent protease La Type II [Vibrio cholerae B33], gi\|22935270... gi\|229345649, gi... - gi\|229517613\|ref\|ZP_04407058.1\| ATP-dependent protease La Type II [Vibrio cholerae RC9], gi\|22934564... gi\|229371907, gi... - gi\|229605421\|ref\|YP_002876125.1\| ATP-dependent protease La Type II [Vibrio cholerae MJ-1236], gi\|229... gi\|75831402, gi\|... - gi\|75831402\|ref\|ZP_00760666.1\| COG1067: Predicted ATP-dependent protease [Vibrio cholerae MO10], gi\|... gi\|9658415, gi\|1... - gi\|9658415\|gb\|AAF96871.1\| ATP-dependent protease LA-related protein [Vibrio cholerae O1 biovar eltor... gi\|121587019, gi... - gi\|121587019\|ref\|ZP_01676797.1\| ATP-dependent protease La [Vibrio cholerae 2740-80], gi\|121548754\|gb... gi\|153818190, gi... - gi\|153818190\|ref\|ZP_01970857.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|229356240, gi... - gi\|229505889\|ref\|ZP_04395398.1\| ATP-dependent protease La Type II [Vibrio cholerae BX 330286], gi\|22...	424.0	[0..8]	[800..1]
gi\|120598116, gi... - gi\|82742880\|ref\|ZP_00905556.1\| ATP-dependent protease, putative [Shewanella sp. W3-18-1], gi\|8271976...	423.0	[0..1]	[803..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTVPTVVPA IPLTSQQIYR RSELQQLSAE CHSTAQLTPL DDIVGQERAQ QAVEFAMGIK  60
   61 EKGYNIYAIG QNGLGKRTMM LRYLNRHDPI EPALFDWCYV VNFDDTRSPK VLKLTAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.39794
Match:	2aneA
Description:	Crystal structure of N-terminal domain of E.Coli Lon Protease
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.161174898429323	bayes_pls_golite062009
catalytic activity	0.147263815852997	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [118-560]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGLEFKKSIE KLMLKLVRAL PLAFDNEMYY ARAEKLKSQL TQKQEAVLTE LSEEAKQKNI  60
   61 SLSLTMQGDY QMIALNGDEP HDEATFSALT EAERNQFESN INGLEVKLRS IIRQNTEWEE 120
  121 EFSDTQQEHD EQVAKDVLVH FFKPLKDKYK HQPDVRAFLT GMQADILSNL DIFLEESEEQ 180
  181 LALAYASLEK KMPRRYQVNV LVSQGEQKYP IVVEESPSYH SLFGYVENAT FRGTVFTDFS 240
  241 LIRPGSLHKA NGGVLLMDAI KVLERPYVWD GLKRALRSRK LDLSSLEREV SLSGTISLAP 300
  301 EPIPLDVKII LFGDHETYQL LQHYDADFIE LFRVTADFED VMDRSDASEA HYARFISSIV 360
  361 HDNNMLHCDR SAIARIIEYS SREAQDQQKL SLHSANIANL LRESNFCAKA VSSKRIEKQH 420
  421 VEQALKNQQK RVSRLHDNIM ESF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1ny5A
Description:	Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	2.01139211432094	bayes_pls_golite062009
two-component response regulator activity	1.38287298974817	bayes_pls_golite062009
signal transducer activity	1.06286887680363	bayes_pls_golite062009
molecular transducer activity	1.06286887680363	bayes_pls_golite062009
binding	1.05015914982969	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
purine ribonucleotide binding	0.337096034207063	bayes_pls_golite062009
ribonucleotide binding	0.33688241622626	bayes_pls_golite062009
purine nucleotide binding	0.335459976383557	bayes_pls_golite062009
nucleotide binding	0.326346376039545	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [561-806]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNGTTLINTH DKVVGQINAL SVVSTSEHQF GLPNRITATT AYGKGEVLDI EHRVKLGGRI  60
   61 HSKGVLILTA YLASVLGKTA QIPLTTYLTF EQSYSGVDGD SASMAECCAI ISAISELPLR 120
  121 QDIAITGSMN QFGEAQPIGG VNEKIEGFFD VCQIKGRTSS QGVIIPESNI ANLMLRQDIV 180
  181 EAVERGEFHI WAINHVTQAM TLLLGKTAAT VQTNESKHID QYAPECIFGI AQQKLNALRA 240
  241 LSKTNS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	1rr9A
Description:	Catalytic domain of E.coli Lon protease
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	1.01457954640976	bayes_pls_golite062009
catalytic activity	0.878454819018611	bayes_pls_golite062009
peptidase activity	0.725583683426111	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.42204457347635	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions:

Predicted functions: