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Protein Overview: gi|24349596, gi|...

General Information:
Name(s) found: gi|24374895 [NCBI NR]
gi|24349596 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24374895|ref|NP_718938.1| deoxyribodipyrimidine photolyase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349596|gb|AAN56382.1|AE015774_17 deoxyribodipyrimidine photolyase [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 512 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [ISSLink to PubMed article]
    Molecular Function: deoxyribodipyrimidine photo-lyase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVNQNRSGK HALMWFRQDL RLTDNQAFTA ACDWVRQHHA AKLKAIYIAT PSQWHQHDIA  60
   61 PIQLDFIQRH VNLLAQGLVS LGVEFELIQL DSFRDIPAFL TSYCEEHSIG RVFAGQEPEI 120
  121 NEQKRDQACV EAGIPLSLSD EHCLLPPGTV LNLSGDMYRV FTPFSRKWRE VAAKQAILPL 180
  181 GVPAPLGSIL SEPKPLFFKN IGSTYLAASK DIASSKKGFN QTAPNPLISS EQWAAGEGQA 240
  241 KRLLNQFIQQ KVQDYKQDRD FPAIDGTSVI SPYLAIGVLS PRQCVAALLQ RFPEVIVDDT 300
  301 SPGRTWLNEL IWREFYRHLL VAFPDLSKGN NFNRQADHVL WRNNQSEFLA WCEGKTGYPI 360
  361 VDAAMRQLNQ TGWMHNRLRM VVASFLTKHL LIDWRWGERY FRQHLIDGDL AANNGGWQWS 420
  421 AGCGCDAQPY FRIFNPMSQS EKFDPDGRFI RKYLPELASW GVTRLHQPNQ QKMPSLFEAP 480
  481 LFASQADYPN AIVEHNAARA RALTVLGVLK KA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..512] PSI-BLAST 135.0 C-terminal domain of DNA photolyase; DNA photolyase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • blue light photoreceptor activity
    		•  9.1431674572348 bayes_pls_golite062009
  • photoreceptor activity
    		•  8.36697703010092 bayes_pls_golite062009
  • DNA photolyase activity
    		•  5.59238172310626 bayes_pls_golite062009
  • transcription repressor activity
    		•  4.08500855631983 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.49617875539388 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.19167058827256 bayes_pls_golite062009
  • binding
    		•  2.13238451443633 bayes_pls_golite062009
  • G-protein coupled photoreceptor activity
    		•  2.1101484978621 bayes_pls_golite062009
  • DNA binding
    		•  2.05514577638135 bayes_pls_golite062009
  • deoxyribodipyrimidine photo-lyase activity
    		•  2.01343813518186 bayes_pls_golite062009
  • FAD binding
    		•  1.81559602758107 bayes_pls_golite062009
  • catalytic activity
    		•  0.609980967042895 bayes_pls_golite062009
  • damaged DNA binding
    		•  0.5555984473366 bayes_pls_golite062009
  • protein binding
    		•  0.452275661161724 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle