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Protein Overview: gi|24374516, gi|...

General Information:
Name(s) found: gi|24374516 [NCBI NR]
gi|24349105 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374516|ref|NP_718559.1| prophage LambdaSo, Cro/CI family transcriptional regulator [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349105|gb|AAN56003.1|AE015737_1 prophage LambdaSo, transcriptional regulator, Cro/CI family [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 272 amino acids

    Gene Ontology:
    Cellular Component: provirus [TASLink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    Molecular Function: transcription factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYDDPKKKV GRNIKRLRLK AGIKSQAALA ELCGWKSQSR VGNYEAGTRA VSAIDAETLA  60
   61 KVLNVTPAEI LYGENNKDDD FVSMPSAQYS SGPYEEEDPF QLFKPKQELQ NAEWHAGFEL 120
  121 WDGDTPLRDD EVALPFYREV ELAAGSGSTF VQENGGCKLR FAKSTLKKSR VEPSNAACVT 180
  181 VSGNSMLPVL RHGTTVGVDT SKKSIIDGEM YAIDHDGMLR VKMLYRTPGG GIRIKSYNND 240
  241 EFPDEFIPPE KASDIKIIGW VFWWSVLNVW NN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..171] PSI-BLAST 11.154902 Crystal Structure of HTH_3 family Transcriptional Regulator from Vibrio cholerae
    2 View Details [172..272] PSI-BLAST 13.30103 No description for 2ho0A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • chromatin binding
    		•  1.95349305901468 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.68628693197843 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.53379254385616 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.5260010669675 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.39112186102649 bayes_pls_golite062009
  • DNA binding
    		•  1.21399747785847 bayes_pls_golite062009
  • transcription activator activity
    		•  1.19708518304437 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.1438331905924 bayes_pls_golite062009
  • binding
    		•  1.11663192519845 bayes_pls_golite062009
  • transcription factor activity
    		•  0.546420977042213 bayes_pls_golite062009
  • catalytic activity
    		•  0.401988496917198 bayes_pls_golite062009
  • protein binding
    		•  0.110960530780648 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.0777655554748162 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle