YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: DNLJ_SHEON

General Information:
Name(s) found: DNLJ_SHEON [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
SHOW ALL
  • DNA ligase OS=Shewanella oneidensis (strain MR-1) GN=ligA PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 689 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [ISSLink to PubMed article]
    DNA replication [ISSLink to PubMed article]
    DNA recombination [ISSLink to PubMed article]
    Molecular Function: DNA ligase (NAD+) activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDIQLDKRL SELLSQAVTP QTAQPLMQAL SQSLNEHNIR YYVDDAPSIT DSEYDRLMQQ  60
   61 LKKLEAEYPQ FVLADSPTQR VGGLALAKFE QITHLKPMLS LDNAFDEADF TAFHKRVSDR 120
  121 VGQVSFCCEP KLDGLAVSIL YRNGVLERAA TRGDGTVGED ITENVKTIKS IPLRLRGNNY 180
  181 PELVEVRGEA FMPKAAFEAL NERARLKDDK QFVNPRNAAA GSLRQLDSKI TASRALSFYA 240
  241 YALGVVEPSS HELAKTHYEQ LQQLKSWGLP VSSEIKVCDE LNQVFAYYKD ILTRRSDLPF 300
  301 EIDGVVMKVN DIAQQQTLGF VAKSPRWAIA YKFPAQEEMT LLEGVDFQVG RTGAVTPVAR 360
  361 LKPVFVGGVT VSNATLHNAD EIERLGVMVG DTVIIRRAGD VIPQIVAIVP ERRSEDAQAI 420
  421 VFPQHCPVCG SLVERLEGEA VARCSGGLFC EAQRKEAIKH FASRKALDID GMGDKIVEQL 480
  481 IDKELVQSPA DLFKLTASMM TMLDRMGMKS ATNLALAIEA AKTTTLPRFL YALGIREVGE 540
  541 ATAANLAAHF GSLDALRIAT IEQLIEVEDI GEVVAQHVAH FFAQPHNLEV IDALIAAGVN 600
  601 WPAIEAPSAD EQPLKGQTWV LTGTLNQLNR NDAKAQLQVL GAKVAGSVSK NTDCLVAGEA 660
  661 AGSKLAKAQE LGVKVIGEDE LLALLAANR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..689] PSI-BLAST 1000.0 No description for 2owoA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle