YRC Public Data Repository - Protein Structure Prediction

Protein:	DNLJ_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	689 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DNLJ_SHEON.

Description	E-value	Query Range	Subject Range
gi\|114047080, gi... - gi\|78691747\|ref\|ZP_00856345.1\| NAD-dependent DNA ligase [Shewanella sp. MR-7], gi\|78508863\|gb\|EAP222...	945.0	[0..1]	[688..3]
gi\|117920017, gi... - gi\|78685944\|ref\|ZP_00850717.1\| NAD-dependent DNA ligase [Shewanella sp. ANA-3], gi\|78506259\|gb\|EAP19...	941.0	[0..1]	[688..3]
gi\|113969850, gi... - gi\|82498323\|ref\|ZP_00883827.1\| NAD-dependent DNA ligase [Shewanella sp. MR-4], gi\|82403692\|gb\|EAP444...	940.0	[0..1]	[688..3]
DNLJ_SHESW - DNA ligase OS=Shewanella sp. (strain W3-18-1) GN=ligA PE=3 SV=1	928.0	[0..1]	[689..1]
DNLJ_SHEPC - DNA ligase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=ligA PE=3 SV=1	926.0	[0..1]	[689..1]
gi\|251785745, gi... - gi\|251785745\|ref\|YP_003000049.1\| hypothetical protein B21_02272 [Escherichia coli BL21], gi\|24237801... gi\|253974295, gi... - gi\|254162394\|ref\|YP_003045502.1\| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606], gi\|... gi\|253978462, gi... - gi\|254289155\|ref\|YP_003054903.1\| NAD-dependent DNA ligase LigA [Escherichia coli BL21(DE3)], gi\|2539... DNLJ_ECOHS - DNA ligase OS=Escherichia coli O9:H4 (strain HS) GN=ligA PE=3 SV=1	925.0	[0..21]	[687..2]
gi\|188490778, gi... - gi\|75515754\|ref\|ZP_00737889.1\| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Esc... gi\|85675396, gi\|... - gi\|89109225\|ref\|AP_003005.1\| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr. W3110]... DNLJ_ECOLI - DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase [NAD+]) - Escherichia coli DNLJ_ECOLC - DNA ligase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ligA PE=3 SV=1 DNLJ_ECODH - DNA ligase OS=Escherichia coli (strain K12 / DH10B) GN=ligA PE=3 SV=1 EG10534 - DNA ligase, NAD(+)-dependent / DNA ligase A, NAD(+)-dependent gi\|238901574, gi... - gi\|238901574\|ref\|YP_002927370.1\| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952], gi\|23886082... EG10534 - DNA ligase, NAD(+)-dependent / DNA ligase A, NAD(+)-dependent	924.0	[0..21]	[687..2]
DNLJ_ECO55 - DNA ligase OS=Escherichia coli (strain 55989 / EAEC) GN=ligA PE=3 SV=1 DNLJ_ECOSE - DNA ligase OS=Escherichia coli (strain SE11) GN=ligA PE=3 SV=1 gi\|192925627, gi... - gi\|75255082\|ref\|ZP_00726982.1\| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Esc... DNLJ_ECO8A - DNA ligase OS=Escherichia coli O8 (strain IAI1) GN=ligA PE=3 SV=1 gi\|194411494, gi... - gi\|75208240\|ref\|ZP_00708603.1\| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Esc... DNLJ_ECO24 - DNA ligase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ligA PE=3 SV=1	923.0	[0..21]	[687..2]
gi\|146615 - gi\|146615\|gb\|AAA24071.1\| lig peptide	923.0	[0..21]	[687..2]
gi\|191174600, gi... - gi\|75235881\|ref\|ZP_00720026.1\| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Esc... DNLJ_ECOL5 - DNA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ligA PE=3 SV=1	923.0	[0..21]	[687..2]

Back

Predicted Domain #1

Region A:
Residues: [1-689]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDIQLDKRL SELLSQAVTP QTAQPLMQAL SQSLNEHNIR YYVDDAPSIT DSEYDRLMQQ  60
   61 LKKLEAEYPQ FVLADSPTQR VGGLALAKFE QITHLKPMLS LDNAFDEADF TAFHKRVSDR 120
  121 VGQVSFCCEP KLDGLAVSIL YRNGVLERAA TRGDGTVGED ITENVKTIKS IPLRLRGNNY 180
  181 PELVEVRGEA FMPKAAFEAL NERARLKDDK QFVNPRNAAA GSLRQLDSKI TASRALSFYA 240
  241 YALGVVEPSS HELAKTHYEQ LQQLKSWGLP VSSEIKVCDE LNQVFAYYKD ILTRRSDLPF 300
  301 EIDGVVMKVN DIAQQQTLGF VAKSPRWAIA YKFPAQEEMT LLEGVDFQVG RTGAVTPVAR 360
  361 LKPVFVGGVT VSNATLHNAD EIERLGVMVG DTVIIRRAGD VIPQIVAIVP ERRSEDAQAI 420
  421 VFPQHCPVCG SLVERLEGEA VARCSGGLFC EAQRKEAIKH FASRKALDID GMGDKIVEQL 480
  481 IDKELVQSPA DLFKLTASMM TMLDRMGMKS ATNLALAIEA AKTTTLPRFL YALGIREVGE 540
  541 ATAANLAAHF GSLDALRIAT IEQLIEVEDI GEVVAQHVAH FFAQPHNLEV IDALIAAGVN 600
  601 WPAIEAPSAD EQPLKGQTWV LTGTLNQLNR NDAKAQLQVL GAKVAGSVSK NTDCLVAGEA 660
  661 AGSKLAKAQE LGVKVIGEDE LLALLAANR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2owoA
Description:	No description for 2owoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits