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Protein Overview: FADR_SHEON

General Information:
Name(s) found: FADR_SHEON [Swiss-Prot]
Description(s) found:
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  • gi|24374414|ref|NP_718457.1| fatty acid metabolism regulator [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348985|gb|AAN55901.1|AE015727_1 fatty acid metabolism regulator protein [Shewanella oneidensis MR-1] [NCBI NR]
  • Fatty acid metabolism regulator protein OS=Shewanella oneidensis (strain MR-1) GN=fadR PE=3 SV=1 [Swiss-Prot]
  • fatty acid metabolism regulator protein [Shewanella oneidensis MR-1]gi|24348985|gb|AAN55901.1| fatty acid metabolism regulator protein [Shewanella oneidensis MR-1]gi|34222563|sp|Q8ED80|FADR_SHEON Fatty acid metabolism regulator protein [nrdb_11152004_Chlamydomonas]
  • fatty acid metabolism regulator [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
  • fatty acid metabolism regulator protein [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 240 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    regulation of fatty acid metabolic process [ISSLink to PubMed article]
    Molecular Function: transcription factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIINAKGPAS FAEKYIVRSI WENKFPPGSI LPAERELSEL IGVTRTTLRE VLQRLARDGW  60
   61 LKIQHGKPTR VNNFWETSGL NILETIADLN PEGFPVLVDQ LLSARTNVSA IYFRGALRNN 120
  121 PDTAMEVLAQ IHQLEDTAES FAEYDYLLHH TLAFSSGNPL YVLILNGFKG LYSRVGRYYF 180
  181 SSSEARQLAL NFYKELELLA KAKNYLDVPA LMRTYGINSG KMWLQLRDDM PSSIAQQDSH 240
  241

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..240] PSI-BLAST 31.30103 Fatty acid responsive transcription factor FadR, N-terminal domain; Fatty acid responsive transcription factor FadR, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  2.56369131794526 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.49794573374102 bayes_pls_golite062009
  • DNA binding
    		•  1.47042497151354 bayes_pls_golite062009
  • transcription factor activity
    		•  1.32068126067873 bayes_pls_golite062009
  • protein binding
    		•  1.08567463180852 bayes_pls_golite062009
  • binding
    		•  0.905540801797993 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.53285802828572 bayes_pls_golite062009
  • transcription activator activity
    		•  0.41507957082843 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle