YRC Public Data Repository - Protein Structure Prediction

Protein:	FADR_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FADR_SHEON.

Description	E-value	Query Range	Subject Range
gi\|27367455, gi\|... - gi\|27367455\|ref\|NP_762982.1\| transcriptional regulator [Vibrio vulnificus CMCP6], gi\|27359024\|gb\|AAO... gi\|37201794, gi\|... - gi\|37677249\|ref\|NP_937645.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37201794\|dbj\|BA...	159.0	[0..1]	[234..10]
gi\|82400647, gi\|... - gi\|82501357\|ref\|ZP_00886701.1\| regulatory protein GntR, HTH [Caldicellulosiruptor saccharolyticus DS...	158.0	[0..7]	[225..15]
gi\|134300031, gi... - gi\|88945080\|ref\|ZP_01148300.1\| regulatory protein GntR, HTH [Desulfotomaculum reducens MI-1], gi\|889...	157.0	[0..3]	[227..6]
gi\|145952363, gi... - gi\|90572724\|ref\|ZP_01229248.1\| hypothetical protein CdifQ_02003925 [Clostridium difficile QCD-32g58]...	156.0	[0..6]	[225..16]
gi\|89048199, gi\|... - gi\|89076123\|ref\|ZP_01162482.1\| putative transcriptional regulatory protein [Photobacterium sp. SKA34...	155.0	[0..1]	[234..10]
gi\|90309525, gi\|... - gi\|90409369\|ref\|ZP_01217453.1\| Transcriptional regulator [Psychromonas sp. CNPT3], gi\|90309525\|gb\|EA...	155.0	[0..2]	[234..3]
gi\|28810103, gi\|... - gi\|28901556\|ref\|NP_801211.1\| putative transcriptional regulatory protein [Vibrio parahaemolyticus RI... gi\|28810103 - gi\|28810103\|dbj\|BAC63044.1\| putative transcriptional regulatory protein [Vibrio parahaemolyticus RIM...	153.0	[0..1]	[234..10]
gi\|115252628, gi... - gi\|126701191\|ref\|YP_001090088.1\| GntR family transcriptional regulator [Clostridium difficile 630], ...	153.0	[0..6]	[225..5]
gi\|56418931, gi\|... - gi\|56418931\|ref\|YP_146249.1\| GntR family transcriptional regulator [Geobacillus kaustophilus HTA426]...	152.0	[0..2]	[233..5]
gi\|71038692, gi\|... - gi\|71065707\|ref\|YP_264434.1\| GntR family transcriptional regulator [Psychrobacter arcticus 273-4], g...	152.0	[0..7]	[233..8]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIINAKGPAS FAEKYIVRSI WENKFPPGSI LPAERELSEL IGVTRTTLRE VLQRLARDGW  60
   61 LKIQHGKPTR VNNFWETSGL NILETIADLN PEGFPVLVDQ LLSARTNVSA IYFRGALRNN 120
  121 PDTAMEVLAQ IHQLEDTAES FAEYDYLLHH TLAFSSGNPL YVLILNGFKG LYSRVGRYYF 180
  181 SSSEARQLAL NFYKELELLA KAKNYLDVPA LMRTYGINSG KMWLQLRDDM PSSIAQQDSH 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.30103
Match:	1hw1A
Description:	Fatty acid responsive transcription factor FadR, N-terminal domain; Fatty acid responsive transcription factor FadR, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.56369131794526	bayes_pls_golite062009
nucleic acid binding	1.49794573374102	bayes_pls_golite062009
DNA binding	1.47042497151354	bayes_pls_golite062009
transcription factor activity	1.32068126067873	bayes_pls_golite062009
protein binding	1.08567463180852	bayes_pls_golite062009
binding	0.905540801797993	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
transcription activator activity	0.41507957082843	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: