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Protein Overview: gi|24374372, gi|...

General Information:
Name(s) found: gi|24374372 [NCBI NR]
gi|24348932 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24374372|ref|NP_718415.1| exonuclease SbcC, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348932|gb|AAN55859.1|AE015722_9 exonuclease SbcC, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 1018 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA recombination [ISSLink to PubMed article]
    Molecular Function: exonuclease activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPLQLSMSA FGPFASTQTI DFTELGDNPL FLINGPTGAG KTTLLDGISF ALYGKTTGNE  60
   61 REGSQMRCDM ADDNLLTEVT FSFKLGNTAY RIRRVPEQDR LKKNGEGSTV QKSEAQLFKI 120
  121 APDGTETLLV ASKVSEATAE IEALTGLDVE QFRQVMVLPQ GKFRELLMAD SKAREQIFSQ 180
  181 LFQTHIYKRI EDILKAKAAD IRALVKEQRA RRDGILQTAE LASDDELAAE FSRIEPELAA 240
  241 AIVAKERSTA AHLQALKQHD SAQQRFAEFT RLSELESQAT LLHEQQADIA AQTARLNVAK 300
  301 QAQRLKPLLD NALSREQEAT IANDQRSRAQ MVLDAAKLAL AKAETEAQEL NGLEPRLRTQ 360
  361 EQLANSLTSL APQLAEFADV EQALAKANIL LQQTKVQGQE TKTALASLVE QRSTYENQLP 420
  421 ALQQQSERQL ATAQALQQQR HLLELFKQWQ QICVKVAQTE EALVLAGLQG KTLNAQHQAA 480
  481 LSDYKSLQLS WFQGQAAILA RELKLEEPCP VCGSIEHPHP ATSHDNLPTD AQLQAAQNAE 540
  541 VNALEQLSKA RAEYRGLQKQ LEAQQLQANE LASSLGDAVE LPLESHIQQL EELTRHAKQA 600
  601 EVATQALQQL QQQIKALQQQ ELGLTQQLEL ERERYHQQEG EVARLSGQLA EKALRIPDEY 660
  661 RSLTALNQAI NDNQQQLEKT RGLIHALRTA QQQASEHCVA AQTALEAAIQ RCHSADELQA 720
  721 LALGDLNSQL HLAGFTDRDA LGAALLADEQ MQALGERIET YQRQCALNQS QLAQLKTQLS 780
  781 DVSVPDLDAL EAMLAEKRQQ LNIAEVAWSQ LNTRFSLLKQ TQTQLSIVDQ KAKALEDEYA 840
  841 IIGTLADVAN GNTGNKISLQ RFVLSVLLDD VLLAATQRLH LMSKGRYRLL RKEDRAKGNK 900
  901 ASGLELEVED AYTAKVRPVA TLSGGESFMA ALSMALGLSD VVQAYAGGIK LDTLFIDEGF 960
  961 GSLDQDSLEL AIRTLMDLQS AGRMIGVISH VSEMKEQINT RIDLLKTSHG SEIKVILP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..382] PSI-BLAST 16.69897 Sc Smc1hd:Scc1-C complex, ATPgS
    2 View Details [383..523] deduced N/A No confident structure predictions are available.
    3 View Details [524..841] FFAS03 2.32 Tropomyosin
    4 View Details [842..1018] PSI-BLAST 7.0 No description for 2pzeA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.37148167194523 bayes_pls_golite062009
  • hydrolase activity
    		•  1.18412998130788 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.16998111465319 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  1.16375481834344 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.15942143195918 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.15882580213621 bayes_pls_golite062009
  • binding
    		•  0.712909626033412 bayes_pls_golite062009
  • ATPase activity
    		•  0.62253664120117 bayes_pls_golite062009
  • helicase activity
    		•  0.00674361801283974 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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