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Protein Overview: gi|24374325, gi|...

General Information:
Name(s) found: gi|24374325 [NCBI NR]
gi|24348874 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374325|ref|NP_718368.1| exonuclease I [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348874|gb|AAN55812.1|AE015718_4 exodeoxyribonuclease I [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 470 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [ISSLink to PubMed article]
    DNA catabolic process [ISSLink to PubMed article]
    Molecular Function: exodeoxyribonuclease I activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTASQPSIF WHDYETFGAN PAKDRPAQFA GIRTDLDLNI ISEPETFYCK QSTDYLPSPE  60
   61 AILITGITPQ LANLKGLPET EFMGRIHTLF SQANTCVAGY NSLRFDDEVT RYGFYRNFID 120
  121 PYAREWQNGN TRWDIIDLVR ACYAFRPDGI HWPLKEDGSP SFKLEHLTQA NGLSHEKAHD 180
  181 AMSDVYATIA MAKLIKEKQP KLYQYYFELR RKQAVSAQID VLNMQPLAHV SSKISAMHGC 240
  241 TTLIAPVAHH PSNKNAIICV NLAMDLSPLF ELDVEQIKTR MYTPRAELAD DELPIPVKQV 300
  301 HLNKCPFITS AKILDDAQAE RLSIDKAFAR GQYKRLKAHP ELREKLAQLF EHDGEATTTD 360
  361 PDLMLYSGGF FSPADKAKME IIRHTLPQNL AALDLQFDDG RIPEMLFRYR ARNYPELLDD 420
  421 QESHRWRTFC QQRLADQDYL LKLENLLQDT EGDEHKQKLL AALCHYLRGL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..470] PSI-BLAST 154.0 Exonuclease I

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrolase activity
    		•  2.30893115816458 bayes_pls_golite062009
  • ribonuclease activity
    		•  2.27368058469313 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  2.26022264830742 bayes_pls_golite062009
  • nuclease activity
    		•  1.81796593394339 bayes_pls_golite062009
  • endonuclease activity
    		•  1.79009816048707 bayes_pls_golite062009
  • exonuclease activity
    		•  1.64964907710028 bayes_pls_golite062009
  • catalytic activity
    		•  1.62277843225829 bayes_pls_golite062009
  • endoribonuclease activity
    		•  1.5391920929568 bayes_pls_golite062009
  • ribonuclease H activity
    		•  1.03274213246433 bayes_pls_golite062009
  • exodeoxyribonuclease I activity
    		•  0.70661333047946 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  0.63299586096139 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.62821439153618 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.1529022053594 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.0105328395026505 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle