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Protein Overview: gi|24374168, gi|...

General Information:
Name(s) found: gi|24374168 [NCBI NR]
gi|24348675 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374168|ref|NP_718211.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348675|gb|AAN55655.1|AE015704_6 ATP-dependent Clp protease, ATP-binding subunit ClpA [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 755 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: proteolysis [ISSLink to PubMed article]
    Molecular Function: ATP binding [ISSLink to PubMed article]
    ATP-dependent peptidase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNKDLEVTL NLAFQQAREA RHEYMTVEHL LLALIDNPAA QEALIACGAN LDKLRDEVAS  60
   61 FIQQTTPIIA DMDDDKETQP TLGFQRVLQR AVFHVQSSGR NEVTGANVLV AIFSEQESQA 120
  121 VYLLRRSDIS RLDVVNFISH GFSKNEDSDA HQDQERSEEQ AEASEERSML SQFATNLNQL 180
  181 AKQGVIDPLI GRDQEIERAI QTLCRRRKNN PLLVGEAGVG KTAIAEGLAY RIVNHQVPEV 240
  241 MAQATVYSLD LGSLLAGTKY RGDFEKRFKN LLKELSADKH AILFIDEIHT IIGAGAASGG 300
  301 VMDASNLLKP LLSSGNLRCM GSTTFQEYQS IFEKDRALAR RFQKVDINEP SVAETTKILM 360
  361 GLKSKYEEYH GVRYTQAAIN SAAVLSAKHI NDRHLPDKAI DVIDEAGARM AMLPQSKRKK 420
  421 TIGQAEIETI VAKIARIPEK SVSATDKDLL RNLERNLKMV VFGQDKAIET LSSAIRLSRS 480
  481 GLGTDKKPVG SFLFAGPTGV GKTEVTNQLA NCLGMKLVRF DMSEYMESHT VSRLIGAPPG 540
  541 YVGYDQGGLL TDAVIKNPHC VVLLDEIEKA HPDVYNLLLQ VMDHGTLTDN NGRKADFRHV 600
  601 TLVMTTNAGV QETIRKSIGF TQQDHTQDAL SEINRVFSPE FRNRLDSIIW FNHLDMTIIA 660
  661 KVVDKFLVEL QAQLDAKHVV LEVSDEARTL LAQKGYDKSM GARPMARVVT ELIKRPLADE 720
  721 LLFGELEHGG IAHVDAKDGE IVIHAERNEK TTSKA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..755] PSI-BLAST 141.0 N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone; ClpA, an Hsp100 chaperone, AAA+ modules

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrolase activity
    		•  2.55157966585974 bayes_pls_golite062009
  • binding
    		•  1.41264401383678 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.569910969126728 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.568840867400671 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.568779924702229 bayes_pls_golite062009
  • nucleotide binding
    		•  0.564275755355315 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.546796591575762 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.543610140926125 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.540750418412449 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.517457589081898 bayes_pls_golite062009
  • ATP binding
    		•  0.1860481660648 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.152859582615242 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.138615225841109 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.030747546048349 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle