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Protein Overview: RUVB_SHEON

General Information:
Name(s) found: RUVB_SHEON [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • Holliday junction ATP-dependent DNA helicase RuvB OS=Shewanella oneidensis (strain MR-1) GN=ruvB PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 334 amino acids

    Gene Ontology:
    Cellular Component: Holliday junction helicase complex [ISSLink to PubMed article]
    Biological Process: DNA recombination [ISSLink to PubMed article]
    Molecular Function: four-way junction helicase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEADRLIQP QLQGQDDVID RAMRPKLLDE YTGQDDTRAQ LKVFIQAAKN REEALDHMLI  60
   61 YGPPGLGKTT LAMIVANEMG VNIKSTSGPV LEKAGDLAAL LTNLEAGDVL FIDEIHRLSP 120
  121 VVEEILYPAM EDYQLDIMIG EGPAARSIKL DLPPFTLVGA TTRAGALTSP LRARFGIPLR 180
  181 LEFYNVKDLS TIVTRSAQVM GLAIDSEGAT EIAKRSRGTP RIANRLLRRV RDYAEVQHDG 240
  241 AVTQNVAELA LNLLDVDGEG FDYMDRKLLL AIIDKFMGGP VGLDNLAAAI GEERETIEDV 300
  301 LEPFLIQQGF IQRTPRGRIA TARAYVHFGM IKPE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..334] PSI-BLAST 55.0 Holliday junction helicase RuvB

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • four-way junction helicase activity
    		•  6.48256695424298 bayes_pls_golite062009
  • DNA helicase activity
    		•  5.33108843895592 bayes_pls_golite062009
  • helicase activity
    		•  5.10646465062463 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  2.88286413334554 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  2.16381244011837 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.13284212711072 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.11265775498161 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.11046854230259 bayes_pls_golite062009
  • hydrolase activity
    		•  1.66122526893602 bayes_pls_golite062009
  • ATPase activity
    		•  1.53315090215319 bayes_pls_golite062009
  • binding
    		•  1.41264401383678 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.1653223755451 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • ATP-dependent 3'-5' DNA helicase activity
    		•  0.7649321307396 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.216266069700019 bayes_pls_golite062009
  • exodeoxyribonuclease V activity
    		•  0.185603938981231 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle