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Protein Overview: gi|24373808, gi|...

General Information:
Name(s) found: gi|24373808 [NCBI NR]
gi|24348203 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24373808|ref|NP_717851.1| transcription-repair coupling factor [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348203|gb|AAN55295.1|AE015667_5 transcription-repair coupling factor [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 1164 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transcription-coupled nucleotide-excision repair [ISSLink to PubMed article]
    Molecular Function: ATP-dependent DNA helicase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHISALTPP VVKNGTQMQT LSCIAGVGQA VTLASLIRQH QGTTLIVTSD TPTALSLELE  60
   61 LNYLLAKTAI KVRLFPDRET LPYDSFSPHQ DLISQRLETL SQITHAEHSV VIVPVTTLMM 120
  121 RLPPKSYLSS NVFVLKKGDK YQLHDVRQQL TDTGYHLVEQ VYEHGEFAIR GSILDIFPTG 180
  181 VNMPLRIELF DDEVETIRHF DPETQRSSTP VNAVRLLPAK EFPTDSSAIE GFRQRYRRRF 240
  241 EVIVKEPESV YQLVSRNLMP AGIENYLPLF FDEVSTLFDY LPKNTQLVTL GDIEKSARAH 300
  301 LQEVEIRYED RRVDPLRPLL APKELYLLIE ELFAAFKPLP RYQFVAPNPD TNGVAAQIDA 360
  361 RALPEVSANH KLKQPLIALQ DYAEQAPRML FSAESEGRRE ALLELLGKIQ LKPSVFSHFD 420
  421 EFIQSDARLG LIVSPLSRGC LLGLGAQTAV SIICETELFG QRISQQRRRE KQRQISNDTL 480
  481 IKNLAELKVG QPIVHLEHGV ALYQGLVTLD TGGIVAEYLQ LEYSGGDKLY VPVSNLHLIS 540
  541 RYSVGADGET HLNKLGNDTW AKAKNKAIEK IRDVAAELLD VYARRQARPG ESCEINDEEY 600
  601 AQFAQGFPFE ETVDQESAIH AVLADMQSPT AMDRLVCGDV GFGKTEVAMR AAFVAVNDGK 660
  661 QVVVLVPTTL LAQQHYENFK DRFADWPVVI EVMSRFRTAK EQTQVLKQLE EGKVDIVIGT 720
  721 HKLLQSEAKF ENLGLLIIDE EHRFGVRQKE KIKALRANVD ILTLTATPIP RTLNMAMSGM 780
  781 RDLSIIATPP AKRLAVKTFV RESDPATVRE AILREILRGG QVYYLHNNVE TIEKCAQDIS 840
  841 TLLPEARVVV AHGQMRERDL ERVMSDFYHQ RFNVLVCTTI IETGIDVPSA NTIIIERADT 900
  901 FGLAQLHQLR GRVGRSHHQA YAYLMTPHPK RMTTDARKRL EAIDALEDLG AGFMLATQDL 960
  961 EIRGAGELLG DEQSGHISKI GFSLYMEMLE SAVKALKQGK EPSLAQMLNQ QCEMELRIPA1020
 1021 LLPEDYVGDV NIRLSLYKRI ASCDSEEALD ELKVELIDRF GLLPDATKNL MEMTLYKHQA1080
 1081 TRLGATKIEV HAKGGSIEFS QDHSIDPGFI IGLLQSQPQI YRMDGPNKLK FILSAETAKD1140
 1141 RLALVKLLLE QLSQHQSQHR LGDK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1164] PSI-BLAST 1000.0 Crystal structure of Escherichia coli transcription-repair coupling factor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.37148167194523 bayes_pls_golite062009
  • hydrolase activity
    		•  1.18412998130788 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.16998111465319 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  1.16375481834344 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.15942143195918 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.15882580213621 bayes_pls_golite062009
  • binding
    		•  0.712909626033412 bayes_pls_golite062009
  • ATPase activity
    		•  0.62253664120117 bayes_pls_golite062009
  • helicase activity
    		•  0.00674361801283974 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.68

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle