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Protein Overview: gi|24373707, gi|...

General Information:
Name(s) found: gi|24373707 [NCBI NR]
gi|24348072 [NCBI NR]
Description(s) found:
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  • gi|24373707|ref|NP_717750.1| exodeoxyribonuclease V, gamma subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348072|gb|AAN55194.1|AE015657_6 exodeoxyribonuclease V, gamma subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • exodeoxyribonuclease V, gamma subunit [Shewanella oneidensis MR-1]gi|24348072|gb|AAN55194.1| exodeoxyribonuclease V, gamma subunit [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • exodeoxyribonuclease V, gamma subunit [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 1270 amino acids

    Gene Ontology:
    Cellular Component: exodeoxyribonuclease V complex [ISSLink to PubMed article]
    Biological Process: DNA recombination [ISSLink to PubMed article]
    Molecular Function: exodeoxyribonuclease V activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKLIQSNQM EVLCAHLAAY LRQPLPGGCL LQSEHILVQS PGMSTWLRLE IAKQNGIAAA  60
   61 LEFPLPSSFI WQLCHDLLPN VPKENAFTKA AMTWKLMQLL PRLLEEESFG PLRHYLGHIE 120
  121 SSSPDSTTKN NQLEASNSIA ADNIKLYQLC GRIADIFDQY LVYRPDWIAA WEANEPLDAL 180
  181 KLNEEQRWQP ILWRALIAFN RDELRQSHYH RANLHQDLIA ALADSTHSLA KLPERLFVFG 240
  241 ISSMAPQTID VLHQLAARID VIILNLSPCQ HYWGDIIDPR HRARMALQYA GKRQLAEQWE 300
  301 DKLEVGNPLL ANNGKMGREL LDMLLELPPE HCDFGDDVYC EPCGDPNDPD CNASMLAGVQ 360
  361 YDILEMQTLD RVLGPDAELY QAVTNRRRLK RVDDSIQIKS CHSPLREVET LHDHLLDLLD 420
  421 RDNQLTPKDI VVMMPDVAAY APYIDAVFAA KQGLEYIPYA IADRGAAQES PLINSFLNLL 480
  481 NINQSRFGLT DILSILEVPA ILRRFQLEED ELPLIRRWLD EAGVRWGRDE QSRVKQGVPA 540
  541 FEQNSWAFGI KRLILGYALR NDAPLYQASP QAPSYLVVSG VEGQSAQALG KLLNFIEVLD 600
  601 ETTLQLAQPQ APCQRLFELT QLLNAFYAPD EDEREQLQEV RDAIATLEQE LQAASPADSY 660
  661 TAAYDVNPYF LDQSGLHSNA LNLSIEVLAQ WFNQRLTESR VGQRYLAGSV NFCTLMPMRS 720
  721 IPFKVVCLLG MNDGIYPRMQ HPVGFDLMAH FGARKGDRSR RLDDRYLFLE ALLSAREQLY 780
  781 ISYIGRSERD NSERIPSMLV SELIEYCQLC YVPESLTAET PAVGNEAAQQ ALLETIISHQ 840
  841 PLQPFDPKLY QSTEPQAQAI KQSYSQQWCP PDISTQSIQR RFIDANTQIV LEDDTIGDSD 900
  901 IQQNIEPLSE EEHVDISAFI RFFRHPAQYF FNRTLKVDLN LNIQADDNDE PFSLNALERY 960
  961 LLQARLLDDA LEQGALEQGA LEQGQAQPSS ELLQRLKASG NLPMQPFDDL LLRQYSHDIA1020
 1021 PLIGRTLFMR GDVAPRHADI RLAFELPLSH VAATTKVSVK RVLLEGRIDD ISPKGLVSCR1080
 1081 PGSAHGRDIL ALYLRHLCLM AAGLTQPSDQ QPSYLQPSYL LDMGHFHALS PIAPKQAHDR1140
 1141 LVHLLQHFYQ GQLHPLCFMP KTSLAYASAE INEDETSQLD GQYDSQHSVR LEAAQSEWLD1200
 1201 EQGELGEGTD PHYQRLFRFP QDFTEANFGK LADEIYRPML SLYHKDTLAQ LEEFVLNAEP1260
 1261 QTATSEGAQQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1270] PSI-BLAST 1000.0 RecBCD:DNA complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • exodeoxyribonuclease V activity
    		•  6.45399906372635 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  4.214585502776 bayes_pls_golite062009
  • exodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  4.1611108835958 bayes_pls_golite062009
  • exodeoxyribonuclease activity
    		•  4.15362118941033 bayes_pls_golite062009
  • single-stranded DNA specific endodeoxyribonuclease activity
    		•  3.87045877570028 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  3.51963098050513 bayes_pls_golite062009
  • exonuclease activity
    		•  3.26822223300964 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  2.16381244011837 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.13284212711072 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.11265775498161 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.11046854230259 bayes_pls_golite062009
  • hydrolase activity
    		•  1.66122526893602 bayes_pls_golite062009
  • endonuclease activity
    		•  1.6546965422816 bayes_pls_golite062009
  • ATPase activity
    		•  1.53315090215319 bayes_pls_golite062009
  • binding
    		•  1.41264401383678 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.1653223755451 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • helicase activity
    		•  0.895387263223335 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.847189464648844 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.8104901979223 bayes_pls_golite062009
  • four-way junction helicase activity
    		•  0.26252931460003 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.216266069700019 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • DNA strand annealing activity
    		•  0.103710151681167 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.0398638249772338 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle