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Protein Overview: gi|24373462, gi|...

General Information:
Name(s) found: gi|24373462 [NCBI NR]
gi|24347753 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24373462|ref|NP_717505.1| isovaleryl-CoA dehydrogenase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347753|gb|AAN54949.1|AE015633_1 isovaleryl-CoA dehydrogenase [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 389 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: leucine catabolic process [ISSLink to PubMed article]
    Molecular Function: isovaleryl-CoA dehydrogenase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLYTSLNF GLGEDVDMLR DAVHDFAQHE IAPIAAKVDH DNAFPNEIWP VLGGMGLLGV  60
   61 TVPEEYGGAN MGYLAHVVAM EEISRASASI GLSYGAHSNL CVNQINRNGN AAQKAKYLPK 120
  121 LVSGEHIGAL AMSEPNAGSD VVSMKLHARK EGDRYILNGN KMWITNGPDA NTYVIYAKTD 180
  181 LTKGAHGITA FIVERGFKGF SQAQKLDKLG MRGSNTCELV FEDVEVPEEN ILGGLNNGVK 240
  241 VLMSGLDYER VVLSGGPLGI MNACMDIVVP YIHEREQFGK SIGEFQLVQG KLADMYTGMN 300
  301 AAKAYVYSVA KSCDRGETTR KDAAGAILYS AELATKMALD AIQLLGGNGY VNEYATGRLL 360
  361 RDAKLYEIGA GTSEIRRMLI GRELYNESK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..389] PSI-BLAST 112.0 Isovaleryl-CoA dehydrogenase, C-domain; Isovaleryl-coa dehydrogenase, NM domains

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  5.78129971677842 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors
    		•  5.37589565177123 bayes_pls_golite062009
  • acyl-CoA dehydrogenase activity
    		•  5.1762698535957 bayes_pls_golite062009
  • isovaleryl-CoA dehydrogenase activity
    		•  4.66102768687662 bayes_pls_golite062009
  • RNA polymerase II transcription mediator activity
    		•  3.58504058273727 bayes_pls_golite062009
  • acyl-CoA oxidase activity
    		•  3.29171082058179 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.88983847563931 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.31681514717218 bayes_pls_golite062009
  • binding
    		•  1.84962038137824 bayes_pls_golite062009
  • catalytic activity
    		•  1.79436687732784 bayes_pls_golite062009
  • long-chain-acyl-CoA dehydrogenase activity
    		•  1.53039234278399 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor
    		•  0.652186027105094 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.634990683062526 bayes_pls_golite062009
  • butyryl-CoA dehydrogenase activity
    		•  0.400090490265931 bayes_pls_golite062009
  • protein binding
    		•  0.0853302624128481 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle