YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373462, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	389 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373462, gi|....

Description	E-value	Query Range	Subject Range
gi\|77996195, gi\|... - gi\|78044080\|ref\|YP_360183.1\| butyryl-CoA dehydrogenase [Carboxydothermus hydrogenoformans Z-2901], g...	475.0	[0..8]	[387..1]
gi\|19704756, gi\|... - gi\|19715082\|gb\|AAL95617.1\| ACYL-COA dehydrogenase, short-chain specific [Fusobacterium nucleatum sub...	467.0	[0..8]	[388..1]
gi\|228670589, gi... - gi\|229112755\|ref\|ZP_04242287.1\| Acyl-CoA dehydrogenase [Bacillus cereus Rock1-15], gi\|228670589\|gb\|E... gi\|218160858, gi... - gi\|218232901\|ref\|YP_002370118.1\| acyl-CoA dehydrogenase [Bacillus cereus B4264], gi\|218160858\|gb\|ACK... gi\|228722321, gi... - gi\|229051012\|ref\|ZP_04194560.1\| Acyl-CoA dehydrogenase [Bacillus cereus AH676], gi\|228722321\|gb\|EEL7... gi\|228798087, gi... - gi\|228961605\|ref\|ZP_04123214.1\| Acyl-CoA dehydrogenase [Bacillus thuringiensis serovar pakistani str... gi\|229147881, gi... - gi\|229147881\|ref\|ZP_04276222.1\| Acyl-CoA dehydrogenase [Bacillus cereus BDRD-ST24], gi\|228635531\|gb\|... gi\|229130590, gi... - gi\|229130590\|ref\|ZP_04259546.1\| Acyl-CoA dehydrogenase [Bacillus cereus BDRD-Cer4], gi\|228652929\|gb\|... gi\|29898933, gi\|... - gi\|30023372\|ref\|NP_835003.1\| Acyl-CoA dehydrogenase, short-chain specific [Bacillus cereus ATCC 1457...	465.0	[0..8]	[386..1]
gi\|221087039, gi... - gi\|221087039\|ref\|ZP_03556579.1\| acyl-CoA dehydrogenase domain protein [Geobacillus sp. Y412MC61], gi... gi\|229331248, gi... - gi\|229497822\|ref\|ZP_04391521.1\| acyl-CoA dehydrogenase domain protein [Geobacillus sp. Y412MC52], gi... gi\|56381770, gi\|... - gi\|56421928\|ref\|YP_149246.1\| acyl-CoA dehydrogenase [Geobacillus kaustophilus HTA426], gi\|56381770\|d...	465.0	[0..8]	[386..1]
gi\|89089326, gi\|... - gi\|89095580\|ref\|ZP_01168474.1\| acyl-CoA dehydrogenase [Bacillus sp. NRRL B-14911], gi\|89089326\|gb\|EA...	464.0	[0..8]	[386..1]
gi\|42784517, gi\|... - gi\|42784517\|ref\|NP_981764.1\| acyl-CoA dehydrogenase [Bacillus cereus ATCC 10987], gi\|42740449\|gb\|AAS...	462.0	[0..8]	[386..1]
gi\|52140219, gi\|... - gi\|52140219\|ref\|YP_086610.1\| acyl-CoA dehydrogenase [Bacillus cereus E33L], gi\|51973688\|gb\|AAU15238....	462.0	[0..8]	[386..1]
gi\|228716292, gi... - gi\|229064991\|ref\|ZP_04200289.1\| Acyl-CoA dehydrogenase [Bacillus cereus AH603], gi\|228716292\|gb\|EEL6... gi\|229014510, gi... - gi\|229014510\|ref\|ZP_04171628.1\| Acyl-CoA dehydrogenase [Bacillus mycoides DSM 2048], gi\|228746860\|gb... gi\|229170050, gi... - gi\|229170050\|ref\|ZP_04297741.1\| Acyl-CoA dehydrogenase [Bacillus cereus AH621], gi\|228613397\|gb\|EEK7... gi\|228647319, gi... - gi\|229136160\|ref\|ZP_04264913.1\| Acyl-CoA dehydrogenase [Bacillus cereus BDRD-ST196], gi\|228647319\|gb... gi\|163865226, gi... - gi\|89205891\|ref\|ZP_01184456.1\| Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central re...	461.0	[0..8]	[386..1]
gi\|217962830, gi... - gi\|217962830\|ref\|YP_002341408.1\| acyl-CoA dehydrogenase [Bacillus cereus AH187], gi\|217064522\|gb\|ACJ... gi\|221242872, gi... - gi\|222098813\|ref\|YP_002532871.1\| acyl-CoA dehydrogenase [Bacillus cereus Q1], gi\|221242872\|gb\|ACM155... gi\|47553562, gi\|... - gi\|47569766\|ref\|ZP_00240438.1\| acyl-CoA dehydrogenase, short-chain specific [Bacillus cereus G9241],... gi\|206745945, gi... - gi\|206975851\|ref\|ZP_03236762.1\| acyl-CoA dehydrogenase [Bacillus cereus H3081.97], gi\|206745945\|gb\|E... gi\|228771185, gi... - gi\|228988568\|ref\|ZP_04148655.1\| Acyl-CoA dehydrogenase [Bacillus thuringiensis serovar tochigiensis ... gi\|228641373, gi... - gi\|229142084\|ref\|ZP_04270609.1\| Acyl-CoA dehydrogenase [Bacillus cereus BDRD-ST26], gi\|228641373\|gb\|...	460.0	[0..8]	[386..1]

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Predicted Domain #1

Region A:
Residues: [1-389]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLYTSLNF GLGEDVDMLR DAVHDFAQHE IAPIAAKVDH DNAFPNEIWP VLGGMGLLGV  60
   61 TVPEEYGGAN MGYLAHVVAM EEISRASASI GLSYGAHSNL CVNQINRNGN AAQKAKYLPK 120
  121 LVSGEHIGAL AMSEPNAGSD VVSMKLHARK EGDRYILNGN KMWITNGPDA NTYVIYAKTD 180
  181 LTKGAHGITA FIVERGFKGF SQAQKLDKLG MRGSNTCELV FEDVEVPEEN ILGGLNNGVK 240
  241 VLMSGLDYER VVLSGGPLGI MNACMDIVVP YIHEREQFGK SIGEFQLVQG KLADMYTGMN 300
  301 AAKAYVYSVA KSCDRGETTR KDAAGAILYS AELATKMALD AIQLLGGNGY VNEYATGRLL 360
  361 RDAKLYEIGA GTSEIRRMLI GRELYNESK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	112.0
Match:	1ivhA
Description:	Isovaleryl-CoA dehydrogenase, C-domain; Isovaleryl-coa dehydrogenase, NM domains
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
general RNA polymerase II transcription factor activity	5.78129971677842	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	5.37589565177123	bayes_pls_golite062009
acyl-CoA dehydrogenase activity	5.1762698535957	bayes_pls_golite062009
isovaleryl-CoA dehydrogenase activity	4.66102768687662	bayes_pls_golite062009
RNA polymerase II transcription mediator activity	3.58504058273727	bayes_pls_golite062009
acyl-CoA oxidase activity	3.29171082058179	bayes_pls_golite062009
oxidoreductase activity	2.88983847563931	bayes_pls_golite062009
transcription regulator activity	2.31681514717218	bayes_pls_golite062009
binding	1.84962038137824	bayes_pls_golite062009
catalytic activity	1.79436687732784	bayes_pls_golite062009
long-chain-acyl-CoA dehydrogenase activity	1.53039234278399	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	0.652186027105094	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.634990683062526	bayes_pls_golite062009
butyryl-CoA dehydrogenase activity	0.400090490265931	bayes_pls_golite062009
protein binding	0.0853302624128481	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: