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Protein Overview: gi|24373362, gi|...

General Information:
Name(s) found: gi|24373362 [NCBI NR]
gi|24347625 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24373362|ref|NP_717405.1| ATP-dependent protease La [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347625|gb|AAN54849.1|AE015624_2 ATP-dependent protease La [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 785 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: proteolysis [ISSLink to PubMed article]
    Molecular Function: ATP-dependent peptidase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLEREAHIE LPVLPLRDVV VYPHMVIPLF VGREKSIRCL ETAMAQDKQI ILVAQRDAEL  60
   61 DEPTKDDIFE VGTVASILQL LKLPDGTVKV LVEGGRRARI TRYTQEADFF VAKAEYLESE 120
  121 PLEDKEEEVL VRSAIGQFEG YIKLNKKIPP EVLTSLSGID EAARLADTMA AHMPLKLEDK 180
  181 QSVLEMTNIG ERLEYLMAMM ESEIDLLQVE KRIRTRVKKQ MEKSQREYYL NEQMKAIQKE 240
  241 LGDLDEGHDE FEVLNRKIEE ANMPSDAKEK AVAELNKLRM MSPMSAEATV VRSYVDWMTS 300
  301 VPWSQRSKIK RDLAKAQEVL DTDHYGLEKV KDRILEYLAV QSRVRQLKGP ILCLVGPPGV 360
  361 GKTSLGQSIA KATGRKYVRV ALGGVRDEAE IRGHRRTYIG SMPGKVIQKM AKVGVKNPLF 420
  421 LLDEIDKMSS DMRGDPASAL LEVLDPEQNA TFNDHYLEVD YDLSDVMFVA TSNSMNIPGP 480
  481 LLDRMEVIRL SGYTEDEKLN IAKQHLLTKQ IERNGLKASE IKVDDSAIVG IIRYYTREAG 540
  541 VRSLERELSK ICRKVVKMIL LDKSVKSVTV TAENLKSFLG VQRFDYGKAE SNNQIGQVTG 600
  601 LAWTEVGGDL LTIEATSVPG KGKLTYTGSL GDVMQESIQA AMTVVRARAE QLGINGDFYE 660
  661 KRDIHVHVPE GATPKDGPSA GAAMCTALVS SLTGNPVRSD VAMTGEITLR GEVLPIGGLK 720
  721 EKLLAAHRGG IKLVLIPKEN ERDLEEIPAN VIADLEIRPV RWVDEVLKLA LERPVQGFEV 780
  781 VKNLA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..127] PSI-BLAST 30.39794 Crystal structure of N-terminal domain of E.Coli Lon Protease
    2 View Details [128..212] FFAS03 1.87 Crystal Structure of the Hypothetical Protein BPP1347 from Bordetella parapertussis, Northeast Structural Genomics Target BoR27.
    3 View Details [213..303] FFAS03 1.86 Complex of Hsp90 and P50
    4 View Details [304..653] PSI-BLAST 21.09691 Holliday junction helicase RuvB
    5 View Details [654..785] PSI-BLAST 38.221849 Catalytic domain of E.coli Lon protease

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.422649754179447 bayes_pls_golite062009
  • catalytic activity
    		•  0.147263815852997 bayes_pls_golite062009
  • protein binding
    		•  0.124422697243688 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • hydrolase activity
    		•  2.18454736627863 bayes_pls_golite062009
  • binding
    		•  1.31163400557981 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.428373955572763 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.424644011903671 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.424583288440993 bayes_pls_golite062009
  • nucleotide binding
    		•  0.422354428195324 bayes_pls_golite062009
  • ATP binding
    		•  0.04834397972685 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.0149501427627318 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.00365326483311895 bayes_pls_golite062009
    5
    Term Confidence Notes
  • hydrolase activity
    		•  1.18773479836745 bayes_pls_golite062009
  • catalytic activity
    		•  0.878454819018611 bayes_pls_golite062009
  • peptidase activity
    		•  0.677675533122378 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.543314877411748 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.444922294492883 bayes_pls_golite062009
  • structural molecule activity
    		•  0.278122898090466 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.214389253755211 bayes_pls_golite062009
  • binding
    		•  0.166587744946789 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle