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Protein Overview: SYQ_SHEON

General Information:
Name(s) found: SYQ_SHEON [Swiss-Prot]
Description(s) found:
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  • gi|24373352|ref|NP_717395.1| glutaminyl-tRNA synthetase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347612|gb|AAN54839.1|AE015623_1 glutaminyl-tRNA synthetase [Shewanella oneidensis MR-1] [NCBI NR]
  • Glutamine--tRNA ligase OS=Shewanella oneidensis (strain MR-1) GN=glnS PE=3 SV=1 [Swiss-Prot]
  • glutaminyl-tRNA synthetase [Shewanella oneidensis MR-1]gi|24347612|gb|AAN54839.1| glutaminyl-tRNA synthetase [Shewanella oneidensis MR-1]gi|46577264|sp|Q8EG26|SYQ_SHEON Glutaminyl-tRNA synthetase (Glutamine--tRNA ligase) (GlnRS) [nrdb_11152004_Chlamydomonas]
  • glutaminyl-tRNA synthetase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 556 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: glutaminyl-tRNA aminoacylation [ISSLink to PubMed article]
    Molecular Function: glutamine-tRNA ligase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHVDTEVRP SNFIRNIIDE DLKSGKHTNV QTRFPPEPNG YLHIGHAKSI CLNFGIARDY  60
   61 QGLCNLRFDD TNPEKEDIDY VNSIQADVRW LGFQWDGEVR YSSNYFDQLH QYAVELINKG 120
  121 LAYVCFLNAD ETREYRGTLK EPGKNSPYRD TPVEENLRLF GKMRLGEFKE GECALRAKID 180
  181 MASPFMCMRD PVIYRIRFAH HHQTGDKWCI YPMYDFTHCI SDALEHITHS LCTLEFQDNR 240
  241 RLYDWVLDNL DDFQAPNRTR QYEFSRLNLE YTLMSKRKLN DLVTRKLVTG WDDPRMPTIA 300
  301 GLRRRGYTPA SIREFCQRIG ITKQENMIEA AMLDACIREE LNEHAPRAMA VLRPLKVVIE 360
  361 NYPEGQIETI QAASHPSDES MGTRELAFGR EIFIDVADFR EEANKQYKRL VMGKEVRLRN 420
  421 AYVIKAERCD KDSEGNITTV YCSYDADTLG KNPADGRKVK GVIHWVEATT AKPAQFRLYQ 480
  481 RLFTDPNPAA AETVDEVLNP NSLEVVNGLV EASLANAPAE KAYQFEREGY FCADNKDSSA 540
  541 DHLVFNLTVA LRDSFE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..556] PSI-BLAST 172.0 Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain; Glutaminyl-tRNA synthetase (GlnRS)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.16276509815667 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  7.16276509815667 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.13957775963187 bayes_pls_golite062009
  • ligase activity
    		•  6.11211476973434 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
    		•  4.45248364270113 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  3.84987020398591 bayes_pls_golite062009
  • structural molecule activity
    		•  3.52958514226509 bayes_pls_golite062009
  • glutamate-tRNA ligase activity
    		•  2.63681738794687 bayes_pls_golite062009
  • catalytic activity
    		•  2.37674226834122 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  2.01261843164558 bayes_pls_golite062009
  • 5S rRNA binding
    		•  1.92764054805963 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  1.88984817882585 bayes_pls_golite062009
  • rRNA binding
    		•  1.48338599637907 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  1.14187887833901 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  1.13743634264647 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  0.844943947059557 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.2293846471193 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.161799496958314 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.126511747475258 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle