YRC Public Data Repository - Protein Structure Prediction

Protein:	SYQ_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	556 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYQ_SHEON.

Description	E-value	Query Range	Subject Range
gi\|91225928, gi\|... - gi\|91225928\|ref\|ZP_01260897.1\| glutaminyl-tRNA synthetase [Vibrio alginolyticus 12G01], gi\|91189578\|...	614.0	[0..5]	[555..3]
gi\|153838383, gi... - gi\|153838383\|ref\|ZP_01991050.1\| glutaminyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810], gi\|1497... SYQ_VIBPA - Glutamine--tRNA ligase OS=Vibrio parahaemolyticus GN=glnS PE=3 SV=1 SYQ_VIBPA - Glutamine--tRNA ligase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=glnS PE=3 ...	614.0	[0..5]	[555..3]
gi\|116184523 - gi\|116184523\|ref\|ZP_01474458.1\| hypothetical protein VEx2w_02002990 [Vibrio sp. Ex25]	613.0	[0..5]	[555..3]
SYQ_VIBCM - Glutamine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=glnS PE=3 SV=1 gi\|229357627, gi... - gi\|229505404\|ref\|ZP_04394914.1\| glutaminyl-tRNA synthetase [Vibrio cholerae BX 330286], gi\|229357627... SYQ_VIBCH - Glutamine--tRNA ligase OS=Vibrio cholerae GN=glnS PE=3 SV=1 gi\|229512441, gi... - gi\|229512441\|ref\|ZP_04401914.1\| glutaminyl-tRNA synthetase [Vibrio cholerae TMA 21], gi\|229350522\|gb... gi\|75823318, gi\|... - gi\|75823318\|ref\|ZP_00752828.1\| COG0008: Glutamyl- and glutaminyl-tRNA synthetases [Vibrio cholerae R... gi\|229518047, gi... - gi\|229518047\|ref\|ZP_04407491.1\| glutaminyl-tRNA synthetase [Vibrio cholerae RC9], gi\|229344762\|gb\|EE... gi\|254848127, gi... - gi\|75829808\|ref\|ZP_00759100.1\| COG0008: Glutamyl- and glutaminyl-tRNA synthetases [Vibrio cholerae M... gi\|229523212, gi... - gi\|229523212\|ref\|ZP_04412619.1\| glutaminyl-tRNA synthetase [Vibrio cholerae TM 11079-80], gi\|2293395... gi\|125621264, gi... - gi\|75818712\|ref\|ZP_00748842.1\| COG0008: Glutamyl- and glutaminyl-tRNA synthetases [Vibrio cholerae V... gi\|229529909, gi... - gi\|229529909\|ref\|ZP_04419299.1\| glutaminyl-tRNA synthetase [Vibrio cholerae 12129(1)], gi\|229333683\|... gi\|121629583, gi... - gi\|75816357\|ref\|ZP_00746830.1\| COG0008: Glutamyl- and glutaminyl-tRNA synthetases [Vibrio cholerae V... gi\|229371078, gi... - gi\|229608423\|ref\|YP_002879071.1\| glutaminyl-tRNA synthetase [Vibrio cholerae MJ-1236], gi\|229371078\|... gi\|254291870, gi... - gi\|254291870\|ref\|ZP_04962653.1\| glutaminyl-tRNA synthetase [Vibrio cholerae AM-19226], gi\|197750805\|... gi\|149740045, gi... - gi\|153826185\|ref\|ZP_01978852.1\| glutaminyl-tRNA synthetase [Vibrio cholerae MZO-2], gi\|149740045\|gb\|... gi\|121587357, gi... - gi\|121587357\|ref\|ZP_01677128.1\| glutaminyl-tRNA synthetase [Vibrio cholerae 2740-80], gi\|121548440\|g... gi\|153216044, gi... - gi\|153216044\|ref\|ZP_01950249.1\| glutaminyl-tRNA synthetase [Vibrio cholerae 1587], gi\|124114494\|gb\|E... gi\|153222787, gi... - gi\|153222787\|ref\|ZP_01953446.1\| glutaminyl-tRNA synthetase [Vibrio cholerae MAK 757], gi\|124118661\|g... gi\|126510845, gi... - gi\|153818619\|ref\|ZP_01971286.1\| glutaminyl-tRNA synthetase [Vibrio cholerae NCTC 8457], gi\|126510845... gi\|126518828, gi... - gi\|229510926\|ref\|ZP_04400405.1\| glutaminyl-tRNA synthetase [Vibrio cholerae B33], gi\|229350891\|gb\|EE... SYQ_VIBCH - Glutamine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=g...	612.0	[0..5]	[555..3]
SYQ_VIBC3 - Glutamine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O39...	612.0	[0..5]	[555..3]
SYQ_VIBVY - Glutamine--tRNA ligase OS=Vibrio vulnificus (strain YJ016) GN=glnS PE=3 SV=1	610.0	[0..5]	[555..3]
gi\|21957965, gi\|... - gi\|22125108\|ref\|NP_668531.1\| glutaminyl-tRNA synthetase [Yersinia pestis KIM], gi\|21957965\|gb\|AAM847...	608.0	[0..5]	[555..46]
SYQ_PECAS - Glutamine--tRNA ligase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=glnS PE=3... SYQ_ERWCT - Glutamine--tRNA ligase OS=Erwinia carotovora subsp. atroseptica GN=glnS PE=3 SV=1	608.0	[0..5]	[555..3]
SYQ_VIBFM - Glutamine--tRNA ligase OS=Vibrio fischeri (strain MJ11) GN=glnS PE=3 SV=1 SYQ_VIBF1 - Glutamine--tRNA ligase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=glnS PE=3 SV=1	608.0	[0..1]	[555..1]
gi\|90580037, gi\|... - gi\|90580037\|ref\|ZP_01235845.1\| glutaminyl-tRNA synthetase [Vibrio angustum S14], gi\|90438922\|gb\|EAS6...	608.0	[0..5]	[555..3]

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Predicted Domain #1

Region A:
Residues: [1-556]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHVDTEVRP SNFIRNIIDE DLKSGKHTNV QTRFPPEPNG YLHIGHAKSI CLNFGIARDY  60
   61 QGLCNLRFDD TNPEKEDIDY VNSIQADVRW LGFQWDGEVR YSSNYFDQLH QYAVELINKG 120
  121 LAYVCFLNAD ETREYRGTLK EPGKNSPYRD TPVEENLRLF GKMRLGEFKE GECALRAKID 180
  181 MASPFMCMRD PVIYRIRFAH HHQTGDKWCI YPMYDFTHCI SDALEHITHS LCTLEFQDNR 240
  241 RLYDWVLDNL DDFQAPNRTR QYEFSRLNLE YTLMSKRKLN DLVTRKLVTG WDDPRMPTIA 300
  301 GLRRRGYTPA SIREFCQRIG ITKQENMIEA AMLDACIREE LNEHAPRAMA VLRPLKVVIE 360
  361 NYPEGQIETI QAASHPSDES MGTRELAFGR EIFIDVADFR EEANKQYKRL VMGKEVRLRN 420
  421 AYVIKAERCD KDSEGNITTV YCSYDADTLG KNPADGRKVK GVIHWVEATT AKPAQFRLYQ 480
  481 RLFTDPNPAA AETVDEVLNP NSLEVVNGLV EASLANAPAE KAYQFEREGY FCADNKDSSA 540
  541 DHLVFNLTVA LRDSFE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	172.0
Match:	1qrtA
Description:	Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain; Glutaminyl-tRNA synthetase (GlnRS)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming aminoacyl-tRNA and related compounds	7.16276509815667	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	7.16276509815667	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	7.13957775963187	bayes_pls_golite062009
ligase activity	6.11211476973434	bayes_pls_golite062009
glutamine-tRNA ligase activity	4.45248364270113	bayes_pls_golite062009
structural constituent of ribosome	3.84987020398591	bayes_pls_golite062009
structural molecule activity	3.52958514226509	bayes_pls_golite062009
glutamate-tRNA ligase activity	2.63681738794687	bayes_pls_golite062009
catalytic activity	2.37674226834122	bayes_pls_golite062009
methionine-tRNA ligase activity	2.01261843164558	bayes_pls_golite062009
5S rRNA binding	1.92764054805963	bayes_pls_golite062009
tyrosine-tRNA ligase activity	1.88984817882585	bayes_pls_golite062009
rRNA binding	1.48338599637907	bayes_pls_golite062009
tryptophan-tRNA ligase activity	1.14187887833901	bayes_pls_golite062009
arginine-tRNA ligase activity	1.13743634264647	bayes_pls_golite062009
cysteine-tRNA ligase activity	0.844943947059557	bayes_pls_golite062009
nucleotidyltransferase activity	0.2293846471193	bayes_pls_golite062009
nucleic acid binding	0.161799496958314	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.126511747475258	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: